RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 RPL35P42766 123 aaKnown RBP13.22□□□□□ -0.29
TPM4-208ENST00000588410 SULT1A2P50226 295 aa13.22□□□□□ -0.29
TPM4-208ENST00000588410 Q6ZNX1 250 aa13.22□□□□□ -0.29
TPM4-208ENST00000588410 SLC51BQ86UW2 128 aa13.22□□□□□ -0.29
TPM4-208ENST00000588410 C14orf178Q8N769 122 aaPredicted RBP13.22□□□□□ -0.29
TPM4-208ENST00000588410 MLST8Q9BVC4 326 aa13.22□□□□□ -0.29
TPM4-208ENST00000588410 CDK2AP2O75956 126 aa13.21□□□□□ -0.29
TPM4-208ENST00000588410 RPL19P84098 196 aaKnown RBP13.21□□□□□ -0.29
TPM4-208ENST00000588410 PGPEP1Q9NXJ5 209 aa13.21□□□□□ -0.29
TPM4-208ENST00000588410 IFNA1P01562 189 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 IGHV3-30P01768 117 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 IGHV3-33P01772 117 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 IGHV3-30-3P0DP02 117 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 IGHV3-30-5P0DP03 117 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 C11orf52Q96A22 123 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 RYR1P21817 5038 aa13.2□□□□□ -0.3
TPM4-208ENST00000588410 PSCAO43653 123 aa13.19□□□□□ -0.3
TPM4-208ENST00000588410 CXCL1P09341 107 aa13.19□□□□□ -0.3
TPM4-208ENST00000588410 LINC00694P0DN24 101 aa13.19□□□□□ -0.3
TPM4-208ENST00000588410 AKAP14Q86UN6 197 aa13.19□□□□□ -0.3
TPM4-208ENST00000588410 A0A087WTM6 91 aa13.18□□□□□ -0.3
TPM4-208ENST00000588410 A0A087WWC5 75 aa13.18□□□□□ -0.3
TPM4-208ENST00000588410 IBA57-AS1B1ANH7 110 aa13.18□□□□□ -0.3
TPM4-208ENST00000588410 DERL1Q9BUN8 251 aa13.18□□□□□ -0.3
TPM4-208ENST00000588410 hCG_2014768A0A024R1R8 64 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 PDE6DO43924 150 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 CENPWQ5EE01 88 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 SPANXN1Q5VSR9 72 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 OR10AG1Q8NH19 301 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 DAZAP1Q96EP5 407 aaKnown RBP13.17□□□□□ -0.3
TPM4-208ENST00000588410 Q9HAA7 133 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 Q9UF83 564 aa13.17□□□□□ -0.3
TPM4-208ENST00000588410 MEF2BQ02080 365 aaPredicted RBP13.16□□□□□ -0.3
TPM4-208ENST00000588410 CDPF1Q6NVV7 123 aa13.16□□□□□ -0.3
TPM4-208ENST00000588410 LRP1BQ9NZR2 4599 aa13.15□□□□□ -0.3
TPM4-208ENST00000588410 TRBV10-1A0A0K0K1A3 114 aa13.15□□□□□ -0.3
TPM4-208ENST00000588410 GNG4P50150 75 aa13.15□□□□□ -0.3
TPM4-208ENST00000588410 RPL36AP83881 106 aaKnown RBP13.15□□□□□ -0.3
TPM4-208ENST00000588410 RPL36ALQ969Q0 106 aaKnown RBP13.15□□□□□ -0.3
TPM4-208ENST00000588410 MED9Q9NWA0 146 aa13.15□□□□□ -0.3
TPM4-208ENST00000588410 MUC21A0A0G2JKD1 596 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 MUC21A0A140T8X8 626 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 SNAI2O43623 268 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 OR5AL1P0C617 328 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 BCL2P10415 239 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 SSTP61278 116 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 ZNF56Q15929 161 aa13.14□□□□□ -0.31
TPM4-208ENST00000588410 SSBP4Q9BWG4 385 aaPredicted RBP13.14□□□□□ -0.31
TPM4-208ENST00000588410 RAB19A4D1S5 217 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 FUSP35637 526 aaKnown RBP eCLIP13.13□□□□□ -0.31
TPM4-208ENST00000588410 RAB4BP61018 213 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 LAGE3Q14657 143 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 MAPKAPK5-AS1Q8N8E1 139 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 SMIM12Q96EX1 92 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 VAX2Q9UIW0 290 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 URGCP-MRPS24S4R325 110 aa13.13□□□□□ -0.31
TPM4-208ENST00000588410 SMIM17P0DL12 118 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 TAGLN2P37802 199 aaKnown RBP13.12□□□□□ -0.31
TPM4-208ENST00000588410 RPS20P60866 119 aaKnown RBP13.12□□□□□ -0.31
TPM4-208ENST00000588410 TOR2AQ5JU69 321 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 C9orf62Q8N4C0 152 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 OR2D3Q8NGH3 330 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 TPPP3Q9BW30 176 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 TM2D2Q9BX73 214 aa13.12□□□□□ -0.31
TPM4-208ENST00000588410 TRBV7-3A0A075B6L6 115 aa13.11□□□□□ -0.31
TPM4-208ENST00000588410 F5H697 171 aa13.11□□□□□ -0.31
TPM4-208ENST00000588410 BIN3Q9NQY0 253 aa13.11□□□□□ -0.31
TPM4-208ENST00000588410 PCLOQ9Y6V0 5065 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 TRAV8-3A0A0A6YYJ7 113 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 XKRY2A2RUG3 117 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 IGLV2-8P01709 118 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 KCNIP4Q6PIL6 250 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 Q8N3U1 123 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.1□□□□□ -0.31
TPM4-208ENST00000588410 AP1S3Q96PC3 154 aa13.1□□□□□ -0.31
TPM4-208ENST00000588410 P01737 135 aa13.09□□□□□ -0.31
TPM4-208ENST00000588410 UBE2D3P61077 147 aa13.09□□□□□ -0.31
TPM4-208ENST00000588410 UBE2D2P62837 147 aa13.09□□□□□ -0.31
TPM4-208ENST00000588410 DAZ4Q86SG3 579 aaKnown RBP13.09□□□□□ -0.31
TPM4-208ENST00000588410 FER1L6-AS1Q8NA97 138 aa13.09□□□□□ -0.31
TPM4-208ENST00000588410 DAZ3Q9NR90 486 aaKnown RBP13.09□□□□□ -0.31
TPM4-208ENST00000588410 DNAH5Q8TE73 4624 aa13.08□□□□□ -0.32
TPM4-208ENST00000588410 GZMBP10144 247 aa13.08□□□□□ -0.32
TPM4-208ENST00000588410 OR10G8Q8NGN5 311 aa13.08□□□□□ -0.32
TPM4-208ENST00000588410 A0A087WX48 190 aa13.07□□□□□ -0.32
TPM4-208ENST00000588410 C19orf71A6NCJ1 209 aa13.07□□□□□ -0.32
TPM4-208ENST00000588410 BLOC1S1P78537 153 aa13.07□□□□□ -0.32
TPM4-208ENST00000588410 NIT1Q86X76 327 aa13.07□□□□□ -0.32
TPM4-208ENST00000588410 NEXN-AS1Q8NBZ9 246 aa13.07□□□□□ -0.32
TPM4-208ENST00000588410 LRCOL1A6NCL2 159 aa13.06□□□□□ -0.32
TPM4-208ENST00000588410 RBFOX3A6NFN3 312 aa13.06□□□□□ -0.32
TPM4-208ENST00000588410 CACNG7P62955 275 aa13.06□□□□□ -0.32
TPM4-208ENST00000588410 ALKAL2Q6UX46 152 aa13.06□□□□□ -0.32
TPM4-208ENST00000588410 HSPG2P98160 4391 aa13.06□□□□□ -0.32
TPM4-208ENST00000588410 TRBV20OR9-2A0A075B6H5 130 aa13.05□□□□□ -0.32
TPM4-208ENST00000588410 IGLV5-52A0A0A0MRZ9 124 aa13.05□□□□□ -0.32
TPM4-208ENST00000588410 IGLC6P0CF74 106 aa13.05□□□□□ -0.32
TPM4-208ENST00000588410 GCSHP23434 173 aa13.05□□□□□ -0.32
TPM4-208ENST00000588410 ELOBQ15370 118 aa13.05□□□□□ -0.32
TPM4-208ENST00000588410 NTN5Q8WTR8 489 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms