RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TSKUQ8WUA8 353 aa0.2□□□□□ -2.38
SMCHD1-204ENST00000581226 SSC5DA1L4H1 1573 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 CHD9Q3L8U1 2897 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 J3QLW9 94 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 LINC01545Q5VT33 79 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 MIC13Q5XKP0 118 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 TMEM141Q96I45 108 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 BATF3Q9NR55 127 aa0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 PTPRZ1P23471 2315 aaPredicted RBP0.19□□□□□ -2.38
SMCHD1-204ENST00000581226 IGSF10Q6WRI0 2623 aa0.18□□□□□ -2.38
SMCHD1-204ENST00000581226 SMIM3Q9BZL3 60 aa0.18□□□□□ -2.38
SMCHD1-204ENST00000581226 HRNRQ86YZ3 2850 aaPredicted RBP0.17□□□□□ -2.38
SMCHD1-204ENST00000581226 DISP2A7MBM2 1401 aa0.17□□□□□ -2.38
SMCHD1-204ENST00000581226 CCL3L1P16619 93 aa0.17□□□□□ -2.38
SMCHD1-204ENST00000581226 NDUFA11Q86Y39 141 aa0.17□□□□□ -2.38
SMCHD1-204ENST00000581226 NDUFA12Q9UI09 145 aa0.17□□□□□ -2.38
SMCHD1-204ENST00000581226 YPEL1O60688 119 aa0.16□□□□□ -2.38
SMCHD1-204ENST00000581226 Q96NJ1 140 aa0.16□□□□□ -2.38
SMCHD1-204ENST00000581226 DSCR8Q96T75 97 aa0.16□□□□□ -2.38
SMCHD1-204ENST00000581226 PROK2Q9HC23 129 aa0.16□□□□□ -2.38
SMCHD1-204ENST00000581226 SIPA1L3O60292 1781 aaPredicted RBP0.16□□□□□ -2.38
SMCHD1-204ENST00000581226 TRAV12-2A0A075B6T6 113 aa0.15□□□□□ -2.39
SMCHD1-204ENST00000581226 TCRBV3S1A0A5B6 114 aa0.15□□□□□ -2.39
SMCHD1-204ENST00000581226 NCS1P62166 190 aa0.15□□□□□ -2.39
SMCHD1-204ENST00000581226 VPS25Q9BRG1 176 aa0.15□□□□□ -2.39
SMCHD1-204ENST00000581226 BET1LQ9NYM9 111 aa0.15□□□□□ -2.39
SMCHD1-204ENST00000581226 FHAD1B1AJZ9 1412 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 GVQW2A0A096LPI5 108 aaPredicted RBP0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 TRAV12-3A0A0B4J271 114 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 SMIM21Q3B7S5 101 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 MMGT1Q8N4V1 131 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 VSTM2AQ8TAG5 236 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 UNC79Q9P2D8 2635 aa0.14□□□□□ -2.39
SMCHD1-204ENST00000581226 SOGA1O94964 1423 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 CLPSL1A2RUU4 121 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 ZNF670-ZNF695F2Z2N8 137 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 CCDC179H3BU77 68 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 APOC1P02654 83 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 SPINK6Q6UWN8 80 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 VMO1Q7Z5L0 202 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 CTAGE3PQ8IX95 158 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 C20orf197Q8N268 126 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 MAFIPQ8WZ33 124 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 ANP32BQ92688 251 aaKnown RBP0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 COA4Q9NYJ1 87 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 ERG28Q9UKR5 140 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 BICRAQ9NZM4 1560 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 ASXL3Q9C0F0 2248 aa0.13□□□□□ -2.39
SMCHD1-204ENST00000581226 NCOR2Q9Y618 2525 aa0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 NCR2O95944 276 aa0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 CYP2G1PQ6ZSU1 146 aa0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 Q6ZUT4 128 aa0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 UBR5O95071 2799 aaPredicted RBP0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 CDK13Q14004 1512 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 MYH9P35579 1960 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-204ENST00000581226 CACNA1CQ13936 2221 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 SPEF2Q9C093 1822 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 NPFFO15130 113 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 PIRTP0C851 137 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 SPCS2Q15005 226 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 COX7B2Q8TF08 81 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 C10orf82Q8WW14 230 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 SDF2Q99470 211 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 SAR1AQ9NR31 198 aa0.11□□□□□ -2.39
SMCHD1-204ENST00000581226 M0R2Z0 102 aa0.1□□□□□ -2.39
SMCHD1-204ENST00000581226 TSTD1Q8NFU3 115 aa0.1□□□□□ -2.39
SMCHD1-204ENST00000581226 FOCADQ5VW36 1801 aa0.1□□□□□ -2.39
SMCHD1-204ENST00000581226 LAMC3Q9Y6N6 1575 aa0.1□□□□□ -2.39
SMCHD1-204ENST00000581226 PHLPP1O60346 1717 aa0.1□□□□□ -2.39
SMCHD1-204ENST00000581226 ZNF292O60281 2723 aa0.09□□□□□ -2.39
SMCHD1-204ENST00000581226 RBAKDNA6NC62 111 aa0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 SSBP1Q04837 148 aaKnown RBP0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 SLC48A1Q6P1K1 146 aa0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 C4orf33Q8N1A6 199 aa0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 LZICQ8WZA0 190 aa0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 AHCTF1Q8WYP5 2266 aa0.09□□□□□ -2.4
SMCHD1-204ENST00000581226 MCRIP1C9JLW8 97 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 RPS25P62851 125 aaKnown RBP0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 C9orf116Q5BN46 136 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 SPANXN1Q5VSR9 72 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 PPP1R1CQ8WVI7 109 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 BPESC1Q9GZL8 116 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 COPZ2Q9P299 210 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 COL7A1Q02388 2944 aa0.08□□□□□ -2.4
SMCHD1-204ENST00000581226 TMEM2Q9UHN6 1383 aa0.07□□□□□ -2.4
SMCHD1-204ENST00000581226 K7ERU9 68 aa0.07□□□□□ -2.4
SMCHD1-204ENST00000581226 UBE2D1P51668 147 aa0.07□□□□□ -2.4
SMCHD1-204ENST00000581226 PRR15LQ9BU68 103 aa0.07□□□□□ -2.4
SMCHD1-204ENST00000581226 MYH8P13535 1937 aa0.07□□□□□ -2.4
SMCHD1-204ENST00000581226 UNC13BO14795 1591 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 DOCK1Q14185 1865 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 GOLGA3Q08378 1498 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 F2Z2F3 143 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 J3QR89 54 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 COX4I1P13073 169 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 UBE2G1P62253 170 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 SMIM11BQ8TCY0 68 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 MYH7P12883 1935 aa0.06□□□□□ -2.4
SMCHD1-204ENST00000581226 IBTKQ9P2D0 1353 aaPredicted RBP0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms