RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ARFGEF3Q5TH69 2177 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 ZFYVE16Q7Z3T8 1539 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 TRAV12-3A0A0B4J271 114 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 IFNA17P01571 189 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 CHD3Q12873 2000 aaKnown RBP0.85□□□□□ -2.27
CHD3-217ENST00000574022 LCE3AQ5TA76 89 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 CYP2G1PQ6ZSU1 146 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 SVBPQ8N300 66 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 DEFB119Q8N690 84 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 Q8N8P6 123 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 SPTSSBQ8NFR3 76 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 C10orf105Q8TEF2 133 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 TSKUQ8WUA8 353 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 CNTLNQ9NXG0 1405 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 UNC13CQ8NB66 2214 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 IFT140Q96RY7 1462 aa0.85□□□□□ -2.27
CHD3-217ENST00000574022 ROBO1Q9Y6N7 1651 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 INTS1Q8N201 2190 aaKnown RBP0.84□□□□□ -2.27
CHD3-217ENST00000574022 MYO18AQ92614 2054 aaKnown RBP0.84□□□□□ -2.27
CHD3-217ENST00000574022 HIVEP2P31629 2446 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 BLMP54132 1417 aaPredicted RBP0.84□□□□□ -2.27
CHD3-217ENST00000574022 VPS8Q8N3P4 1428 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 TRBV10-3A0A0K0K1G6 114 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 TEX49A0A1B0GTD5 131 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 LOC101927531A0A1B0GV80 90 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 TMEM218A2RU14 115 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 IFITM1P13164 125 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 FXYD4P59646 89 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 RBM3P98179 157 aaKnown RBP0.84□□□□□ -2.27
CHD3-217ENST00000574022 INSL4Q14641 139 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 XAF1Q6GPH4 301 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 C8orf59Q8N0T1 100 aaPredicted RBP0.84□□□□□ -2.27
CHD3-217ENST00000574022 C10orf82Q8WW14 230 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 DSCR8Q96T75 97 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 AMELYQ99218 206 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 COA4Q9NYJ1 87 aa0.84□□□□□ -2.27
CHD3-217ENST00000574022 KDM6BO15054 1643 aa0.84□□□□□ -2.28
CHD3-217ENST00000574022 NRXN2Q9P2S2 1712 aa0.84□□□□□ -2.28
CHD3-217ENST00000574022 CPSF1Q10570 1443 aaKnown RBP0.83□□□□□ -2.28
CHD3-217ENST00000574022 CC2D2AQ9P2K1 1620 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 NBDYA0A0U1RRE5 68 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 FAM24AA6NFZ4 105 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 OOSP1A8MZH6 123 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 NCR3O14931 201 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 S100A8P05109 93 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 KRTAP12-3P60328 96 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 HSD52Q0P140 79 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 FXYD3Q14802 87 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 Q6ZQY7 126 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 DEFB132Q7Z7B7 95 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 SPHKAPQ2M3C7 1700 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 ARAP2Q8WZ64 1704 aa0.83□□□□□ -2.28
CHD3-217ENST00000574022 AFDNP55196 1824 aaKnown RBP0.82□□□□□ -2.28
CHD3-217ENST00000574022 SHROOM2Q13796 1616 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 NINQ8N4C6 2090 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 CASKIN1Q8WXD9 1431 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 TNS1Q9HBL0 1735 aaKnown RBP0.82□□□□□ -2.28
CHD3-217ENST00000574022 TRAV30A0A087WSZ9 112 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 FXYD1O00168 92 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 SPINK8P0C7L1 97 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 ATP5EP56381 51 aaPredicted RBP0.82□□□□□ -2.28
CHD3-217ENST00000574022 CCL8P80075 99 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 C5orf38Q86SI9 138 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 Q86TA4 180 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 C4orf33Q8N1A6 199 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 C5orf56Q8N8D9 126 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 AQP10Q96PS8 301 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 AKAP12Q02952 1782 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 PARP14Q460N5 1801 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 PATJQ8NI35 1801 aa0.82□□□□□ -2.28
CHD3-217ENST00000574022 PHIPQ8WWQ0 1821 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 TRAV13-2A0A0B4J235 113 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 UBE2L5PA0A1B0GUS4 154 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 SSSCA1O60232 199 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 LYNX1P0DP58 116 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 UBE2D1P51668 147 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 EFNA4P52798 201 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 CAV3P56539 151 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 UBE2L3P68036 154 aaKnown RBP0.81□□□□□ -2.28
CHD3-217ENST00000574022 LINC00575Q6W349 94 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 ZNF818PQ6ZRF7 136 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 COMMD6Q7Z4G1 85 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 C20orf197Q8N268 126 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 TTC9CQ8N5M4 171 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 ACBD7Q8N6N7 88 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 PPP1R1CQ8WVI7 109 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 CCL19Q99731 98 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 DLG5Q8TDM6 1919 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 C10orf71Q711Q0 1435 aa0.81□□□□□ -2.28
CHD3-217ENST00000574022 TET1Q8NFU7 2136 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 ARHGAP5Q13017 1502 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 PLXNA1Q9UIW2 1896 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 MYH8P13535 1937 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 LRRC37A3O60309 1634 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 TRBV30A0A0K0K1B3 111 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 HCG22E2RYF7 251 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 M0R143 59 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 SIX6O95475 246 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 CCL3L1P16619 93 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 S100A10P60903 97 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms