RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 SFTA2Q6UW10 78 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 ABCA2Q9BZC7 2435 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 TRAV12-3A0A0B4J271 114 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 A6NDX4 124 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 ID1P41134 155 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 SDHAF1A6NFY7 115 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 TMEM141Q96I45 108 aa11.7□□□□□ -0.54
NUP88-207ENST00000573584 LOC107984156A0A0G2JMH3 177 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 APOMO95445 188 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 ARL17AQ8IVW1 177 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 DLX4Q92988 240 aaPredicted RBP11.69□□□□□ -0.54
NUP88-207ENST00000573584 A0A0J9YY99 117 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 IGLV1-40P01703 118 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 SPATA25Q9BR10 227 aa11.69□□□□□ -0.54
NUP88-207ENST00000573584 MAP1AP78559 2803 aaPredicted RBP11.68□□□□□ -0.54
NUP88-207ENST00000573584 TSPAN13O95857 204 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 TMEM170BQ5T4T1 132 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 FAM74A4Q5TZK3 123 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 TIMM17AQ99595 171 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 PIMREGQ9BSJ6 248 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 NDUFS8O00217 210 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 DCANP1Q8TF63 244 aa11.68□□□□□ -0.54
NUP88-207ENST00000573584 SCGB1A1P11684 91 aa11.67□□□□□ -0.54
NUP88-207ENST00000573584 PSMB2P49721 201 aa11.67□□□□□ -0.54
NUP88-207ENST00000573584 CFAP126Q5VTH2 177 aa11.67□□□□□ -0.54
NUP88-207ENST00000573584 TRBV27A0A0K0K1C4 114 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 ZNRF2Q8NHG8 242 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 K7EMT4 169 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 CLEC2AQ6UVW9 174 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 NDUFA11Q86Y39 141 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 ZNF256Q9Y2P7 627 aaPredicted RBP11.66□□□□□ -0.54
NUP88-207ENST00000573584 TSPEAR-AS2P59090 65 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 ZNF876PQ49A33 203 aa11.66□□□□□ -0.54
NUP88-207ENST00000573584 LGALS9O00182 355 aa11.65□□□□□ -0.54
NUP88-207ENST00000573584 SMCPP49901 116 aaPredicted RBP11.65□□□□□ -0.54
NUP88-207ENST00000573584 MDFICQ9P1T7 246 aa11.65□□□□□ -0.54
NUP88-207ENST00000573584 TRAV12-2A0A075B6T6 113 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 TRBV6-5A0A0K0K1A5 114 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 IGKV3-20P01619 116 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 ZNF688P0C7X2 276 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 UBE2D3P61077 147 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 UBE2D2P62837 147 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 FOXI1Q12951 378 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 SLC25A29Q8N8R3 303 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 IGHV3-16A0A0C4DH30 117 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 IGHV3-30P01768 117 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 IGHV3-30-5P0DP03 117 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 C10orf105Q8TEF2 133 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 C1QTNF4Q9BXJ3 329 aa11.64□□□□□ -0.55
NUP88-207ENST00000573584 CFHR3Q02985 330 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 ZNF56Q15929 161 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 ZNF418Q8TF45 676 aaPredicted RBP11.63□□□□□ -0.55
NUP88-207ENST00000573584 TMEM95Q3KNT9 176 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 C9orf85Q96MD7 179 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 J3QQQ9 107 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 CFC1BP0CG36 223 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 CFC1P0CG37 223 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 LYRM7Q5U5X0 104 aa11.63□□□□□ -0.55
NUP88-207ENST00000573584 NCOR2Q9Y618 2525 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 M0QY20 66 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 GNLYP22749 145 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 SYT8Q8NBV8 401 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 ATP6V0E2Q8NHE4 81 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 OPRPNQ99935 248 aaPredicted RBP11.62□□□□□ -0.55
NUP88-207ENST00000573584 LGALS3P17931 250 aaKnown RBP11.62□□□□□ -0.55
NUP88-207ENST00000573584 NFE4Q86UQ8 179 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 Q8N1Y9 231 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 CCL19Q99731 98 aa11.62□□□□□ -0.55
NUP88-207ENST00000573584 AMELXQ99217 191 aa11.61□□□□□ -0.55
NUP88-207ENST00000573584 CHD8Q9HCK8 2581 aa11.61□□□□□ -0.55
NUP88-207ENST00000573584 IGHV4-30-2A0A087WSY4 118 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 MSMBP08118 114 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 SNRPD3P62318 126 aaKnown RBP11.6□□□□□ -0.55
NUP88-207ENST00000573584 A0A0J9YX75 114 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 C10orf126Q8N4M7 172 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 PTH2Q96A98 100 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 ODF3Q96PU9 254 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 SPTBN4Q9H254 2564 aa11.6□□□□□ -0.55
NUP88-207ENST00000573584 CIDEAO60543 219 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 TCL1BO95988 128 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.553e-8■■■■■ 27.2
NUP88-207ENST00000573584 PSMB8P28062 276 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 ATP5J2P56134 94 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 RHOHQ15669 191 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 NSUN5P1Q3KNT7 163 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 TRPT1Q86TN4 253 aaKnown RBP11.59□□□□□ -0.55
NUP88-207ENST00000573584 PRO1854Q9UHT4 67 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 ITPR1Q14643 2758 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 CRYBG3Q68DQ2 2970 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 CELSR2Q9HCU4 2923 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 IGHV1OR15-1A0A075B7D0 117 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 AVPP01185 164 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 P0DMU3 169 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 FAM231AP0DMU4 169 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 FAM231CP0DMU5 169 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 SPINK13Q1W4C9 94 aa11.59□□□□□ -0.55
NUP88-207ENST00000573584 TRBV20-1A0A075B6N2 111 aa11.58□□□□□ -0.56
NUP88-207ENST00000573584 SCGB1C2P0DMR2 95 aa11.58□□□□□ -0.56
NUP88-207ENST00000573584 C10orf99Q6UWK7 81 aa11.58□□□□□ -0.56
NUP88-207ENST00000573584 TMEM223A0PJW6 202 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms