RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 GTSF1Q8WW33 167 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 PGLYRP4Q96LB8 373 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 PHLDA3Q9Y5J5 127 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 GAGE12BA1L429 117 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 C7orf77A4D0Y5 90 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 LYRM9A8MSI8 78 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 M0R381 172 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 SPINK4O60575 86 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 GAGE7O76087 117 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 GAGE12FP0CL80 117 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 GAGE12GP0CL81 117 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 GAGE12IP0CL82 117 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 SPART-AS1P0CW21 52 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 LYZL1Q6UWQ5 148 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 ANAPC16Q96DE5 110 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 RPS10P5Q9NQ39 176 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 UBR4Q5T4S7 5183 aa7.95□□□□□ -1.14
CLN3-226ENST00000567160 A0A1W2PPQ1 181 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 HIGD1CA8MV81 97 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 SNAI2O43623 268 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 SNAPINO95295 136 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 OR5AL1P0C617 328 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 DAD1P61803 113 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 RHEBQ15382 184 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 ZNF876PQ49A33 203 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 SPANXN1Q5VSR9 72 aa7.94□□□□□ -1.14
CLN3-226ENST00000567160 TRGV2A0A075B6R0 118 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 TEX48A0A1B0GUV7 120 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 SMIM27A0A1W2PRY6 76 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 F2Z2F3 143 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 CTRLP40313 264 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 FAM3BP58499 235 aaPredicted RBP7.93□□□□□ -1.14
CLN3-226ENST00000567160 DMRTA1Q5VZB9 504 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 SPATA12Q7Z6I5 190 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 ZFP82Q8N141 532 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 C6orf223Q8N319 242 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 SYT8Q8NBV8 401 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 SSBP4Q9BWG4 385 aaPredicted RBP7.93□□□□□ -1.14
CLN3-226ENST00000567160 CTDSP1Q9GZU7 261 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 GFRA4Q9GZZ7 299 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 DNAH5Q8TE73 4624 aa7.93□□□□□ -1.14
CLN3-226ENST00000567160 ATP6V1G1O75348 118 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 IGHV3-53P01767 116 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 CACNG7P62955 275 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 ATRAIDQ6UW56 229 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 LINC00612Q8N6U2 182 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 NUP35Q8NFH5 326 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 RASL10AQ92737 203 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 BORCS7Q96B45 105 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 C18orf15Q96N68 181 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 JPT2Q9H910 190 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 MSRB1Q9NZV6 116 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 NAT8BQ9UHF3 227 aa7.92□□□□□ -1.14
CLN3-226ENST00000567160 SRRM2Q9UQ35 2752 aaKnown RBP7.92□□□□□ -1.14
CLN3-226ENST00000567160 A0A087WWC5 75 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 FAM231BA6NCW3 169 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 NXPH4O95158 308 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 HTN3P15516 51 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 NTF3P20783 257 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 FOXA3P55318 350 aaPredicted RBP7.91□□□□□ -1.14
CLN3-226ENST00000567160 PTH2Q96A98 100 aa7.91□□□□□ -1.14
CLN3-226ENST00000567160 A0A1B0GUT8 65 aa7.9□□□□□ -1.14
CLN3-226ENST00000567160 TWIST1Q15672 202 aa7.9□□□□□ -1.14
CLN3-226ENST00000567160 MRPL54Q6P161 138 aaKnown RBP7.9□□□□□ -1.14
CLN3-226ENST00000567160 OR4C5Q8NGB2 326 aa7.9□□□□□ -1.14
CLN3-226ENST00000567160 A0A087WWL8 130 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 IGHV3-73A0A0B4J1V6 119 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 TRAV4A0A0B4J268 109 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 RS1O15537 224 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 ATP5G1P05496 136 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 CFAP126Q5VTH2 177 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 WDR73Q6P4I2 378 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 KCNIP4Q6PIL6 250 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 FRZBQ92765 325 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 ZNF479Q96JC4 524 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 AP1S3Q96PC3 154 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 CNFNQ9BYD5 112 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 SAMD10Q9BYL1 202 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 TMEM242Q9NWH2 141 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 URGCP-MRPS24S4R325 110 aa7.89□□□□□ -1.15
CLN3-226ENST00000567160 FLG2Q5D862 2391 aaPredicted RBP7.88□□□□□ -1.15
CLN3-226ENST00000567160 NBDYA0A0U1RRE5 68 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 A8MWV9 139 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 S100PP25815 95 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 RIGQ13278 110 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 PIK3CD-AS1Q5SR53 167 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 FAM74A4Q5TZK3 123 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 C14orf178Q8N769 122 aaPredicted RBP7.88□□□□□ -1.15
CLN3-226ENST00000567160 IMMP2LQ96T52 175 aa7.88□□□□□ -1.15
CLN3-226ENST00000567160 MYCBP2O75592 4640 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 TRGV4A0A0C4DH28 118 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 F5H768 121 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 J3QL48 77 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 MGPP08493 103 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 TRGC1P0CF51 173 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 HOXA5P20719 270 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 EVI2AP22794 236 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 S100A1P23297 94 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 CAMPP49913 170 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 Q5VSD8 79 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms