RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C14orf178Q8N769 122 aaPredicted RBP13.96□□□□□ -0.17
CLN3-219ENST00000565778 Q9UF83 564 aa13.96□□□□□ -0.17
CLN3-219ENST00000565778 A0A087WWL8 130 aa13.95□□□□□ -0.18
CLN3-219ENST00000565778 SFRP2Q96HF1 295 aa13.95□□□□□ -0.18
CLN3-219ENST00000565778 Q9HAA7 133 aa13.95□□□□□ -0.18
CLN3-219ENST00000565778 SCRT2Q9NQ03 307 aa13.95□□□□□ -0.18
CLN3-219ENST00000565778 LRP1BQ9NZR2 4599 aa13.94□□□□□ -0.18
CLN3-219ENST00000565778 CDPF1Q6NVV7 123 aa13.94□□□□□ -0.18
CLN3-219ENST00000565778 ZFP82Q8N141 532 aa13.93□□□□□ -0.18
CLN3-219ENST00000565778 HSPG2P98160 4391 aa13.92□□□□□ -0.18
CLN3-219ENST00000565778 CCL20P78556 96 aa13.92□□□□□ -0.18
CLN3-219ENST00000565778 EIF5AL1Q6IS14 154 aaKnown RBP13.92□□□□□ -0.18
CLN3-219ENST00000565778 MLST8Q9BVC4 326 aa13.92□□□□□ -0.18
CLN3-219ENST00000565778 GNG13Q9P2W3 67 aa13.92□□□□□ -0.18
CLN3-219ENST00000565778 RAB5CP51148 216 aa13.91□□□□□ -0.18
CLN3-219ENST00000565778 RPL19P84098 196 aaKnown RBP13.91□□□□□ -0.18
CLN3-219ENST00000565778 PRR27Q6MZM9 219 aa13.91□□□□□ -0.18
CLN3-219ENST00000565778 A0A087WWC5 75 aa13.9□□□□□ -0.18
CLN3-219ENST00000565778 LINC00694P0DN24 101 aa13.9□□□□□ -0.18
CLN3-219ENST00000565778 Q8N1X5 172 aa13.9□□□□□ -0.18
CLN3-219ENST00000565778 MANBALQ9NQG1 85 aa13.9□□□□□ -0.18
CLN3-219ENST00000565778 TEX46H3BTG2 121 aa13.89□□□□□ -0.19
CLN3-219ENST00000565778 TRAV1-1A0A0B4J248 108 aa13.88□□□□□ -0.19
CLN3-219ENST00000565778 RPL35P42766 123 aaKnown RBP13.88□□□□□ -0.19
CLN3-219ENST00000565778 LRCOL1A6NCL2 159 aa13.87□□□□□ -0.19
CLN3-219ENST00000565778 CXCL1P09341 107 aa13.87□□□□□ -0.19
CLN3-219ENST00000565778 SSTP61278 116 aa13.87□□□□□ -0.19
CLN3-219ENST00000565778 Q8N3U1 123 aa13.87□□□□□ -0.19
CLN3-219ENST00000565778 TM2D2Q9BX73 214 aa13.87□□□□□ -0.19
CLN3-219ENST00000565778 MUC21A0A0G2JKD1 596 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 MUC21A0A140T8X8 626 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 GCSHP23434 173 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 SULT1A2P50226 295 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 RPL36AP83881 106 aaKnown RBP13.86□□□□□ -0.19
CLN3-219ENST00000565778 LAGE3Q14657 143 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 SPANXN1Q5VSR9 72 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 DAZ4Q86SG3 579 aaKnown RBP13.86□□□□□ -0.19
CLN3-219ENST00000565778 TCTE3Q8IZS6 198 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 OR10AG1Q8NH19 301 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 RPL36ALQ969Q0 106 aaKnown RBP13.86□□□□□ -0.19
CLN3-219ENST00000565778 DAZ3Q9NR90 486 aaKnown RBP13.86□□□□□ -0.19
CLN3-219ENST00000565778 URGCP-MRPS24S4R325 110 aa13.86□□□□□ -0.19
CLN3-219ENST00000565778 TRBV10-1A0A0K0K1A3 114 aa13.85□□□□□ -0.19
CLN3-219ENST00000565778 KRTAP10-1P60331 282 aa13.85□□□□□ -0.19
CLN3-219ENST00000565778 DERL1Q9BUN8 251 aa13.85□□□□□ -0.19
CLN3-219ENST00000565778 TRAV8-3A0A0A6YYJ7 113 aa13.84□□□□□ -0.19
CLN3-219ENST00000565778 RAB4BP61018 213 aa13.84□□□□□ -0.19
CLN3-219ENST00000565778 TOR2AQ5JU69 321 aa13.84□□□□□ -0.19
CLN3-219ENST00000565778 C11orf52Q96A22 123 aa13.84□□□□□ -0.19
CLN3-219ENST00000565778 DAZAP1Q96EP5 407 aaKnown RBP13.84□□□□□ -0.19
CLN3-219ENST00000565778 SSBP4Q9BWG4 385 aaPredicted RBP13.84□□□□□ -0.19
CLN3-219ENST00000565778 TRBV7-3A0A075B6L6 115 aa13.83□□□□□ -0.2
CLN3-219ENST00000565778 IGLV5-52A0A0A0MRZ9 124 aa13.83□□□□□ -0.2
CLN3-219ENST00000565778 SNAI2O43623 268 aa13.83□□□□□ -0.2
CLN3-219ENST00000565778 OR5AL1P0C617 328 aa13.83□□□□□ -0.2
CLN3-219ENST00000565778 ZNF56Q15929 161 aa13.83□□□□□ -0.2
CLN3-219ENST00000565778 DNAH5Q8TE73 4624 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 APOBP04114 4563 aaKnown RBP13.82□□□□□ -0.2
CLN3-219ENST00000565778 F5H697 171 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 XGP55808 180 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 CENPWQ5EE01 88 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 SLC51BQ86UW2 128 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 Q8N814 137 aa13.82□□□□□ -0.2
CLN3-219ENST00000565778 RAB19A4D1S5 217 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 IFNA1P01562 189 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 C1QBP02746 253 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 UBE2D3P61077 147 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 UBE2D2P62837 147 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 NIT1Q86X76 327 aa13.81□□□□□ -0.2
CLN3-219ENST00000565778 NTN5Q8WTR8 489 aaPredicted RBP13.81□□□□□ -0.2
CLN3-219ENST00000565778 ABCA13Q86UQ4 5058 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 A0A087WX48 190 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 PDE6DO43924 150 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 SMIM17P0DL12 118 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 MEF2BQ02080 365 aaPredicted RBP13.8□□□□□ -0.2
CLN3-219ENST00000565778 KCNIP4Q6PIL6 250 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 MED9Q9NWA0 146 aa13.8□□□□□ -0.2
CLN3-219ENST00000565778 GNG4P50150 75 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 Q6ZNX1 250 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 OR2D3Q8NGH3 330 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 OR10G8Q8NGN5 311 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 TPPP3Q9BW30 176 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 KLK12Q9UKR0 248 aa13.79□□□□□ -0.2
CLN3-219ENST00000565778 TMEM262E9PQX1 116 aa13.78□□□□□ -0.2
CLN3-219ENST00000565778 IGLV2-8P01709 118 aa13.78□□□□□ -0.2
CLN3-219ENST00000565778 GZMBP10144 247 aa13.78□□□□□ -0.2
CLN3-219ENST00000565778 RPS20P60866 119 aaKnown RBP13.78□□□□□ -0.2
CLN3-219ENST00000565778 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.78□□□□□ -0.2
CLN3-219ENST00000565778 NEXN-AS1Q8NBZ9 246 aa13.78□□□□□ -0.2
CLN3-219ENST00000565778 EPM2AB3EWF7 344 aa13.77□□□□□ -0.21
CLN3-219ENST00000565778 ELOBQ15370 118 aa13.77□□□□□ -0.21
CLN3-219ENST00000565778 RMI2Q96E14 147 aa13.77□□□□□ -0.21
CLN3-219ENST00000565778 VAX2Q9UIW0 290 aa13.77□□□□□ -0.21
CLN3-219ENST00000565778 COX11Q9Y6N1 276 aa13.77□□□□□ -0.21
CLN3-219ENST00000565778 RBFOX3A6NFN3 312 aa13.76□□□□□ -0.21
CLN3-219ENST00000565778 FER1L6-AS1Q8NA97 138 aa13.76□□□□□ -0.21
CLN3-219ENST00000565778 SMIM12Q96EX1 92 aa13.76□□□□□ -0.21
CLN3-219ENST00000565778 TRBV6-8A0A0A6YYG3 113 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 XKRY2A2RUG3 117 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 C19orf71A6NCJ1 209 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms