RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 IFITM1P13164 125 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 Q8N1Y9 231 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 C8orf31Q8N9H6 132 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 C21orf62Q9NYP8 219 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 IGHV3-30P01768 117 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 IGHV3-30-5P0DP03 117 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 DEFB1P60022 68 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 HIF1ANQ9NWT6 349 aa12.37□□□□□ -0.43
LINC00554-201ENST00000564841 CTSGP08311 255 aa12.36□□□□□ -0.43
LINC00554-201ENST00000564841 SUMO2P61956 95 aaKnown RBP12.36□□□□□ -0.43
LINC00554-201ENST00000564841 ZANQ9Y493 2812 aa12.36□□□□□ -0.43
LINC00554-201ENST00000564841 TMEM262E9PQX1 116 aa12.36□□□□□ -0.43
LINC00554-201ENST00000564841 PRR9Q5T870 116 aa12.36□□□□□ -0.43
LINC00554-201ENST00000564841 MGPP08493 103 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 ARL3P36405 182 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 IGHV3-64A0A075B6Q5 118 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 ODF3Q96PU9 254 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 VCX2Q9H322 139 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 PRO1854Q9UHT4 67 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 C15orf53Q8NAA6 179 aa12.35□□□□□ -0.43
LINC00554-201ENST00000564841 IGLV11-55A0A075B6I3 123 aa12.34□□□□□ -0.43
LINC00554-201ENST00000564841 A4D1N5 150 aa12.34□□□□□ -0.43
LINC00554-201ENST00000564841 TSHBP01222 138 aa12.34□□□□□ -0.43
LINC00554-201ENST00000564841 RPL39P62891 51 aaKnown RBP12.34□□□□□ -0.43
LINC00554-201ENST00000564841 ZFP36P26651 326 aaKnown RBP12.34□□□□□ -0.43
LINC00554-201ENST00000564841 TMEM170BQ5T4T1 132 aa12.34□□□□□ -0.43
LINC00554-201ENST00000564841 CCDC168Q8NDH2 2452 aa12.33□□□□□ -0.44
LINC00554-201ENST00000564841 IGHV3OR16-10A0A075B7F0 116 aa12.33□□□□□ -0.44
LINC00554-201ENST00000564841 C11orf71Q6IPW1 123 aa12.33□□□□□ -0.44
LINC00554-201ENST00000564841 IGLV4-69A0A075B6H9 119 aa12.33□□□□□ -0.44
LINC00554-201ENST00000564841 RNF223E7ERA6 249 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 NBR2O15453 112 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 MEIG1Q5JSS6 88 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 BPESC1Q9GZL8 116 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 ANKRD17O75179 2603 aaKnown RBP12.32□□□□□ -0.44
LINC00554-201ENST00000564841 SRSF2Q01130 221 aaKnown RBP12.32□□□□□ -0.44
LINC00554-201ENST00000564841 ORMDL2Q53FV1 153 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 LYRM7Q5U5X0 104 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 CHCHD5Q9BSY4 110 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 LINC00527Q9UJ94 153 aa12.32□□□□□ -0.44
LINC00554-201ENST00000564841 NAV2Q8IVL1 2488 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 ECSCRQ19T08 205 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 NRGNQ92686 78 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 TRAV2A0A0B4J234 112 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 Q1RN00 199 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 DPM3Q9P2X0 92 aa12.31□□□□□ -0.44
LINC00554-201ENST00000564841 OPRPNQ99935 248 aaPredicted RBP12.3□□□□□ -0.44
LINC00554-201ENST00000564841 PPDPFQ9H3Y8 114 aa12.3□□□□□ -0.44
LINC00554-201ENST00000564841 ZNRF2Q8NHG8 242 aa12.3□□□□□ -0.44
LINC00554-201ENST00000564841 SLC25A29Q8N8R3 303 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 DOPEY2Q9Y3R5 2298 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 IGHV3-33P01772 117 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 VMO1Q7Z5L0 202 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 ZNF580Q9UK33 172 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 TP53TG1Q9Y2A0 90 aa12.29□□□□□ -0.44
LINC00554-201ENST00000564841 LY6LH3BQJ8 138 aa12.28□□□□□ -0.44
LINC00554-201ENST00000564841 ID1P41134 155 aa12.28□□□□□ -0.44
LINC00554-201ENST00000564841 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
LINC00554-201ENST00000564841 SLC50A1Q9BRV3 221 aa12.28□□□□□ -0.44
LINC00554-201ENST00000564841 CHD6Q8TD26 2715 aa12.27□□□□□ -0.44
LINC00554-201ENST00000564841 ADARB2-AS1A8MUL3 147 aa12.27□□□□□ -0.44
LINC00554-201ENST00000564841 BUB3O43684 328 aa12.27□□□□□ -0.44
LINC00554-201ENST00000564841 Q6ZSV7 163 aa12.27□□□□□ -0.44
LINC00554-201ENST00000564841 AMELXQ99217 191 aa12.27□□□□□ -0.44
LINC00554-201ENST00000564841 CLEC3BP05452 202 aa12.27□□□□□ -0.45
LINC00554-201ENST00000564841 ASIPP42127 132 aa12.27□□□□□ -0.45
LINC00554-201ENST00000564841 MUSTN1Q8IVN3 82 aa12.27□□□□□ -0.45
LINC00554-201ENST00000564841 JPT2Q9H910 190 aa12.27□□□□□ -0.45
LINC00554-201ENST00000564841 S100A4P26447 101 aaKnown RBP12.27□□□□□ -0.45
LINC00554-201ENST00000564841 DUX3Q96PT4 197 aa12.27□□□□□ -0.45
LINC00554-201ENST00000564841 ABCA2Q9BZC7 2435 aa12.26□□□□□ -0.45
LINC00554-201ENST00000564841 SETD2Q9BYW2 2564 aaPredicted RBP12.26□□□□□ -0.45
LINC00554-201ENST00000564841 LINC01620Q4KN68 170 aa12.26□□□□□ -0.45
LINC00554-201ENST00000564841 G3V318 75 aa12.26□□□□□ -0.45
LINC00554-201ENST00000564841 GNRH2O43555 120 aa12.26□□□□□ -0.45
LINC00554-201ENST00000564841 TMEM263Q8WUH6 116 aaKnown RBP12.26□□□□□ -0.45
LINC00554-201ENST00000564841 SONP18583 2426 aaKnown RBP12.25□□□□□ -0.45
LINC00554-201ENST00000564841 TMEM190Q8WZ59 177 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 CENPVL3A0A0U1RRI6 287 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 J3QQQ9 107 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 ZNF56Q15929 161 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 TNFRSF18Q9Y5U5 241 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 CREBBPQ92793 2442 aa12.25□□□□□ -0.45
LINC00554-201ENST00000564841 IGKV3-7A0A075B6H7 116 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 TMEM95Q3KNT9 176 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 LY6G5BQ8NDX9 201 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 PHLDA3Q9Y5J5 127 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 NOTCH2Q04721 2471 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 MUC4Q99102 2169 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 HERVK_113P61574 105 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 C15orf32Q32M92 178 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 GPHB5Q86YW7 130 aa12.24□□□□□ -0.45
LINC00554-201ENST00000564841 BBC3Q96PG8 261 aaPredicted RBP12.24□□□□□ -0.45
LINC00554-201ENST00000564841 IGHV4-4A0A075B6R2 117 aa12.23□□□□□ -0.45
LINC00554-201ENST00000564841 CLPSL1A2RUU4 121 aa12.23□□□□□ -0.45
LINC00554-201ENST00000564841 NPC2P61916 151 aa12.23□□□□□ -0.45
LINC00554-201ENST00000564841 CLEC19AQ6UXS0 136 aa12.23□□□□□ -0.45
LINC00554-201ENST00000564841 IGIPA6NJ69 53 aa12.22□□□□□ -0.45
LINC00554-201ENST00000564841 LGALS3P17931 250 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms