RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 FUT9Q9Y231 359 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 TANC2Q9HCD6 1990 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 CCDC168Q8NDH2 2452 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 CLPSL1A2RUU4 121 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 A6NDX4 124 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 H3BUA1 57 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 H3BUX3 64 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 M0R378 163 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 CORTO00230 105 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 IFNA4P05014 189 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 OR5AC1P0C628 307 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 DEFA4P12838 97 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 AKR1C2P52895 323 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 TAS2R45P59539 299 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 UBA52P62987 128 aaKnown RBP3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 EBI3Q14213 229 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 DEFB112Q30KQ8 113 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 BRD3OSQ6XYD6 125 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 ZNF833PQ6ZTB9 187 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 SPATA12Q7Z6I5 190 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 PCP2Q8IVA1 136 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 SIGLECL1Q8N7X8 197 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 Q8N9W7 124 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 CIB3Q96Q77 187 aaPredicted RBP3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 DERL1Q9BUN8 251 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 IL36BQ9NZH7 164 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 ABCA1O95477 2261 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 RELNP78509 3460 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 NAV3Q8IVL0 2385 aa3.51□□□□□ -1.85
VPS35P1-201ENST00000563400 MYO9AB2RTY4 2548 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 IGKV1D-33P01593 117 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 IGKV1-33P01594 117 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 HLA-DQA1P01909 254 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 PMP2P02689 132 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 CTSDP07339 412 aaPredicted RBP3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 SNCAP37840 140 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 FXYD4P59646 89 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 FAM104BQ5XKR9 115 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 SLC35E3Q7Z769 313 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 NR2C2APQ86WQ0 139 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 PDZD9Q8IXQ8 264 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 AMN1Q8IY45 258 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 OR5H6Q8NGV6 325 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 USMG5Q96IX5 58 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 C16orf95Q9H693 158 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 NIT2Q9NQR4 276 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 ABCA12Q86UK0 2595 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 PLXNB1O43157 2135 aa3.5□□□□□ -1.85
VPS35P1-201ENST00000563400 IGKV2D-30A0A075B6S6 120 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 C3orf85A0A1B0GTC6 90 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 A0A1B0GVG6 124 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 C20orf202A1L168 122 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TMEM256-PLSCR3K7ERE1 68 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TRGV3P03979 118 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 PRM2P04554 102 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 CXCL1P09341 107 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 IGLC6P0CF74 106 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 SAA2P0DJI9 122 aaPredicted RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 P0DMU3 169 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 FAM231AP0DMU4 169 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 FAM231CP0DMU5 169 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 NFYAP23511 347 aaPredicted RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 PSMB8P28062 276 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 CCL20P78556 96 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TMEM14EPQ6UXP3 125 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 C11orf42Q8N5U0 333 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 RBPMSQ93062 196 aaKnown RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 NKX6-2Q9C056 277 aaPredicted RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 METTL1Q9UBP6 276 aaKnown RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TEX15Q9BXT5 2789 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 WNK2Q9Y3S1 2297 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TEP1Q99973 2627 aaKnown RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 MED13LQ71F56 2210 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 IGHV3-21A0A0B4J1V1 117 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 A8MWP4 228 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 IFNA17P01571 189 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 CD3DP04234 171 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 CSN1S1P47710 185 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 EIF2B2P49770 351 aaKnown RBP3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 BRK1Q8WUW1 75 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 RMI2Q96E14 147 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 SMR3AQ99954 134 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 NABP2Q9BQ15 211 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TTTY13Q9BZ97 58 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 TUBA4BQ9H853 241 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 ZNF355PQ9NSJ1 428 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 BET1LQ9NYM9 111 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 CENPEQ02224 2701 aa3.49□□□□□ -1.85
VPS35P1-201ENST00000563400 APCP25054 2843 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 TRAV30A0A087WSZ9 112 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 A6NED7 52 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 K7ERS5 55 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 LYRM1O43325 122 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 CFDP00746 253 aaPredicted RBP3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 TRAPPC2P0DI81 140 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 TRAPPC2BP0DI82 140 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 FABP2P12104 132 aa3.48□□□□□ -1.85
VPS35P1-201ENST00000563400 SLC25A6P12236 298 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms