RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZFP82Q8N141 532 aa10.59□□□□□ -0.71
VPS39-203ENST00000561797 PKHD1P08F94 4074 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 IGHV3-30P01768 117 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 IGHV3-33P01772 117 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 IGHV3-30-3P0DP02 117 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 IGHV3-30-5P0DP03 117 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 C10orf126Q8N4M7 172 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 C11orf52Q96A22 123 aa10.58□□□□□ -0.72
VPS39-203ENST00000561797 MUC21A0A0G2JKD1 596 aa10.57□□□□□ -0.72
VPS39-203ENST00000561797 MUC21A0A140T8X8 626 aa10.57□□□□□ -0.72
VPS39-203ENST00000561797 EREGO14944 169 aa10.57□□□□□ -0.72
VPS39-203ENST00000561797 ERVFC1-1P60608 527 aa10.57□□□□□ -0.72
VPS39-203ENST00000561797 LINC01556Q5JQF7 62 aa10.57□□□□□ -0.72
VPS39-203ENST00000561797 RAB19A4D1S5 217 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 IFNA1P01562 189 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 LINC00694P0DN24 101 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 FUSP35637 526 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS39-203ENST00000561797 SSTP61278 116 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 MEF2BQ02080 365 aaPredicted RBP10.56□□□□□ -0.72
VPS39-203ENST00000561797 CENPWQ5EE01 88 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 C9orf62Q8N4C0 152 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 OR10AG1Q8NH19 301 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 HERC2O95714 4834 aa10.56□□□□□ -0.72
VPS39-203ENST00000561797 CXCL1P09341 107 aa10.55□□□□□ -0.72
VPS39-203ENST00000561797 MED9Q9NWA0 146 aa10.55□□□□□ -0.72
VPS39-203ENST00000561797 BOLA1Q9Y3E2 137 aa10.55□□□□□ -0.72
VPS39-203ENST00000561797 IBA57-AS1B1ANH7 110 aa10.54□□□□□ -0.72
VPS39-203ENST00000561797 PDE6DO43924 150 aa10.54□□□□□ -0.72
VPS39-203ENST00000561797 IGLV2-8P01709 118 aa10.54□□□□□ -0.72
VPS39-203ENST00000561797 SPANXN1Q5VSR9 72 aa10.54□□□□□ -0.72
VPS39-203ENST00000561797 DAZAP1Q96EP5 407 aaKnown RBP10.54□□□□□ -0.72
VPS39-203ENST00000561797 Q9HAA7 133 aa10.54□□□□□ -0.72
VPS39-203ENST00000561797 DNAH11Q96DT5 4516 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 DYNC1H1Q14204 4646 aaKnown RBP10.53□□□□□ -0.72
VPS39-203ENST00000561797 A0A087WTM6 91 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 SNAI2O43623 268 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 BCL2P10415 239 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 GNG4P50150 75 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 Q8N3U1 123 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 SSBP4Q9BWG4 385 aaPredicted RBP10.53□□□□□ -0.72
VPS39-203ENST00000561797 KRTAP17-1Q9BYP8 105 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 VAX2Q9UIW0 290 aa10.53□□□□□ -0.72
VPS39-203ENST00000561797 PSCAO43653 123 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 CDK2AP2O75956 126 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 OR5AL1P0C617 328 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 GZMBP10144 247 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 ZNF56Q15929 161 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 ALKAL2Q6UX46 152 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 OR2D3Q8NGH3 330 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 PGPEP1Q9NXJ5 209 aa10.52□□□□□ -0.73
VPS39-203ENST00000561797 A0A087WWC5 75 aa10.51□□□□□ -0.73
VPS39-203ENST00000561797 RPL36AP83881 106 aaKnown RBP10.51□□□□□ -0.73
VPS39-203ENST00000561797 RPL36ALQ969Q0 106 aaKnown RBP10.51□□□□□ -0.73
VPS39-203ENST00000561797 TPPP3Q9BW30 176 aa10.51□□□□□ -0.73
VPS39-203ENST00000561797 TRBV20OR9-2A0A075B6H5 130 aa10.5□□□□□ -0.73
VPS39-203ENST00000561797 TRBV10-1A0A0K0K1A3 114 aa10.5□□□□□ -0.73
VPS39-203ENST00000561797 RBFOX3A6NFN3 312 aa10.5□□□□□ -0.73
VPS39-203ENST00000561797 F5H697 171 aa10.5□□□□□ -0.73
VPS39-203ENST00000561797 RAB4BP61018 213 aa10.5□□□□□ -0.73
VPS39-203ENST00000561797 TRBV7-3A0A075B6L6 115 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 C19orf71A6NCJ1 209 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 RPS20P60866 119 aaKnown RBP10.49□□□□□ -0.73
VPS39-203ENST00000561797 UBE2D3P61077 147 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 UBE2D2P62837 147 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 DAZ4Q86SG3 579 aaKnown RBP10.49□□□□□ -0.73
VPS39-203ENST00000561797 FER1L6-AS1Q8NA97 138 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 SMIM12Q96EX1 92 aa10.49□□□□□ -0.73
VPS39-203ENST00000561797 DAZ3Q9NR90 486 aaKnown RBP10.49□□□□□ -0.73
VPS39-203ENST00000561797 A0A1B0GVG6 124 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 P01737 135 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 SMIM17P0DL12 118 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 TAGLN2P37802 199 aaKnown RBP10.48□□□□□ -0.73
VPS39-203ENST00000561797 NKX2-5P52952 324 aaPredicted RBP10.48□□□□□ -0.73
VPS39-203ENST00000561797 BLOC1S1P78537 153 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 NEXN-AS1Q8NBZ9 246 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 BIN3Q9NQY0 253 aa10.48□□□□□ -0.73
VPS39-203ENST00000561797 IGLC6P0CF74 106 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 CDPF1Q6NVV7 123 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 MAPKAPK5-AS1Q8N8E1 139 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 AP1S3Q96PC3 154 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 KRTAP4-5Q9BYR2 181 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 URGCP-MRPS24S4R325 110 aa10.47□□□□□ -0.73
VPS39-203ENST00000561797 XKRY2A2RUG3 117 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 LRCOL1A6NCL2 159 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 LAGE3Q14657 143 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 NIT1Q86X76 327 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 OR10G8Q8NGN5 311 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 KIF25-AS1Q9Y6Z4 181 aa10.46□□□□□ -0.73
VPS39-203ENST00000561797 MGPP08493 103 aa10.45□□□□□ -0.74
VPS39-203ENST00000561797 NUDT10Q8NFP7 164 aa10.45□□□□□ -0.74
VPS39-203ENST00000561797 OCC1Q8TAD7 63 aa10.45□□□□□ -0.74
VPS39-203ENST00000561797 NUDT11Q96G61 164 aa10.45□□□□□ -0.74
VPS39-203ENST00000561797 TM2D2Q9BX73 214 aa10.45□□□□□ -0.74
VPS39-203ENST00000561797 TRAV8-3A0A0A6YYJ7 113 aa10.44□□□□□ -0.74
VPS39-203ENST00000561797 CACNG7P62955 275 aa10.44□□□□□ -0.74
VPS39-203ENST00000561797 TOR2AQ5JU69 321 aa10.44□□□□□ -0.74
VPS39-203ENST00000561797 LYZL1Q6UWQ5 148 aa10.44□□□□□ -0.74
VPS39-203ENST00000561797 KLK12Q9UKR0 248 aa10.44□□□□□ -0.74
VPS39-203ENST00000561797 A0A087WX48 190 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 TMEM262E9PQX1 116 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms