RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DSTQ03001 7570 aaKnown RBP0.29□□□□□ -2.36
USP3-209ENST00000558925 GVINP1Q7Z2Y8 2422 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 KIAA1109Q2LD37 5005 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 ATRQ13535 2644 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 NBEAL1Q6ZS30 2694 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 TRBV20-1A0A075B6N2 111 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 J3QLW9 94 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 COX4I1P13073 169 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 NPC2P61916 151 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 LINC01545Q5VT33 79 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 OR2T2Q6IF00 324 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 C10orf99Q6UWK7 81 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 MMGT1Q8N4V1 131 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 TSKUQ8WUA8 353 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 PPDPFLQ8WWR9 84 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 IFI27L1Q96BM0 104 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 FAM103A1Q9BTL3 118 aaKnown RBP0.29□□□□□ -2.36
USP3-209ENST00000558925 C10orf95Q9H7T3 257 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 TAS2R8Q9NYW2 309 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 NDUFA12Q9UI09 145 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 SONP18583 2426 aaKnown RBP0.29□□□□□ -2.36
USP3-209ENST00000558925 CEP250Q9BV73 2442 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 CCDC171Q6TFL3 1326 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 ACACBO00763 2458 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 SPTAN1Q13813 2472 aaKnown RBP0.29□□□□□ -2.36
USP3-209ENST00000558925 PCLOQ9Y6V0 5065 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 OVOS2A0A0J9YW53 1432 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 DISP2A7MBM2 1401 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 SOGA1O94964 1423 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 OVOS2Q6IE36 1432 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 REV3LO60673 3130 aa0.29□□□□□ -2.36
USP3-209ENST00000558925 CDK12Q9NYV4 1490 aaPredicted RBP0.29□□□□□ -2.36
USP3-209ENST00000558925 TPRP12270 2363 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 LAMA2P24043 3122 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 TENM4Q6N022 2769 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 MUC22E2RYF6 1773 aaPredicted RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 ZNF670-ZNF695F2Z2N8 137 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 J3QR89 54 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 NPFFO15130 113 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 ARPC4P59998 168 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 ELOF1P60002 83 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 RPL37P61927 97 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 RRAS2P62070 204 aaPredicted RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 RPS25P62851 125 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 FAM107BQ9H098 131 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 TPT1P8Q9HAU6 139 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 TMEM14BQ9NUH8 114 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 PDZD2O15018 2839 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 CNOT1A5YKK6 2376 aaKnown RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 EP300Q09472 2414 aaPredicted RBP0.28□□□□□ -2.36
USP3-209ENST00000558925 AKAP11Q9UKA4 1901 aa0.28□□□□□ -2.36
USP3-209ENST00000558925 PRG4Q92954 1404 aaPredicted RBP0.28□□□□□ -2.37
USP3-209ENST00000558925 CEP295Q9C0D2 2601 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 PTPRMP28827 1452 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 TENM3Q9P273 2699 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 CELSR3Q9NYQ7 3312 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 CFAP46Q8IYW2 2715 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 MUC2Q02817 5179 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 SZT2Q5T011 3432 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 APCP25054 2843 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 SETBP1Q9Y6X0 1596 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 MYO7AQ13402 2215 aa0.28□□□□□ -2.37
USP3-209ENST00000558925 CACNA1EQ15878 2313 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 TLN1Q9Y490 2541 aaKnown RBP0.27□□□□□ -2.37
USP3-209ENST00000558925 TLN2Q9Y4G6 2542 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 TANC1Q9C0D5 1861 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 MEGF8Q7Z7M0 2845 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 NDUFA2O43678 99 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 YPEL1O60688 119 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 PIRTP0C851 137 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 PYYP10082 97 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 COPZ1P61923 177 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 KLKP1Q107X0 134 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 SPINK13Q1W4C9 94 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 KRTAP20-1Q3LI63 56 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 Q6ZUT4 128 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 TMEM141Q96I45 108 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 SDF2Q99470 211 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 PFDN5Q99471 154 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 ERG28Q9UKR5 140 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 UHRF1BP1LA0JNW5 1464 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 NSD1Q96L73 2696 aaPredicted RBP0.27□□□□□ -2.37
USP3-209ENST00000558925 TENM2Q9NT68 2774 aa0.27□□□□□ -2.37
USP3-209ENST00000558925 RBBP6Q7Z6E9 1792 aaKnown RBP0.27□□□□□ -2.37
USP3-209ENST00000558925 MYH9P35579 1960 aaKnown RBP0.26□□□□□ -2.37
USP3-209ENST00000558925 VCANP13611 3396 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 PCNX1Q96RV3 2341 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 FAM186AA6NE01 2351 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 RIF1Q5UIP0 2472 aaKnown RBP0.26□□□□□ -2.37
USP3-209ENST00000558925 MGAM2Q2M2H8 2515 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 PKD1L1Q8TDX9 2849 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 CFAP47Q6ZTR5 3102 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 A0A096LNT2 108 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 TRAV2A0A0B4J234 112 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 TRAV12-3A0A0B4J271 114 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 TEX49A0A1B0GTD5 131 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 TCRBV3S1A0A5B6 114 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 APOC1P02654 83 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 KRTAP2-3P0C7H8 128 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 SPINK7P58062 85 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms