RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 TRAV9-2A0A087WT02 112 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 IGHV3-16A0A0C4DH30 117 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 KIR2DL5BA0A0G2JN68 375 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 KIR2DL5BA0A0G2JPC4 375 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1BA6NDE4 496 aaKnown RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1EA6NEQ0 496 aaKnown RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1DP0C7P1 496 aaKnown RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 HINT1P49773 126 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 HNRNPA3P51991 378 aaKnown RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 PROK1P58294 105 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 KIR2DL5AQ8N109 375 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 RNF152Q8N8N0 203 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 MIEN1Q9BRT3 115 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 DPH3P1Q9H4G8 78 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 IGHV1OR15-1A0A075B7D0 117 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 H3BMM0 161 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 PPBPP02775 128 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 P0DMU3 169 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 FAM231AP0DMU4 169 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 FAM231CP0DMU5 169 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 TSPOP30536 169 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 NMUP48645 174 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 EMP1P54849 157 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 FOXI2Q6ZQN5 318 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 ERASQ7Z444 233 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 STHQ8IWL8 128 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 TEX29Q8N6K0 151 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 FAM19A4Q96LR4 140 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 GOLT1BQ9Y3E0 138 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 TSSC4Q9Y5U2 329 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 U3KQK5 164 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 PKD1L1Q8TDX9 2849 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 RNASE1P07998 156 aaKnown RBP4.37□□□□□ -1.71
SYNE2-225ENST00000557060 IGLC3P0DOY3 106 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 HILS1P60008 231 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 SUMO2P61956 95 aaKnown RBP4.37□□□□□ -1.71
SYNE2-225ENST00000557060 TMEM86BQ8N661 226 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 NRACQ8N912 160 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 RASL10AQ92737 203 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 TTTY13Q9BZ97 58 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 CSTL1Q9H114 145 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 DUSP14O95147 198 aaKnown RBP4.37□□□□□ -1.71
SYNE2-225ENST00000557060 IGHV3-53P01767 116 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 RIPPLY3P57055 190 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 ODF3L2Q3SX64 289 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 ZC2HC1BQ5TFG8 222 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 AMTNQ6UX39 209 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 NXT2Q9NPJ8 142 aaKnown RBP4.37□□□□□ -1.71
SYNE2-225ENST00000557060 TMEM160Q9NX00 188 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 Q9UF83 564 aa4.37□□□□□ -1.71
SYNE2-225ENST00000557060 DNLZQ5SXM8 178 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 SAMD13Q5VXD3 122 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 Q6ZVH6 145 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 MRPL16Q9NX20 251 aaKnown RBP4.36□□□□□ -1.71
SYNE2-225ENST00000557060 OR11H12B2RN74 326 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 M0R143 59 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 LCE2BO14633 110 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 CRXO43186 299 aaPredicted RBP4.36□□□□□ -1.71
SYNE2-225ENST00000557060 HLA-DRB4P13762 266 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 G0S2P27469 103 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 LAGE3Q14657 143 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 SUMO4Q6EEV6 95 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 SPATA3Q8NHX4 192 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 C20orf144Q9BQM9 153 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 UQCR10Q9UDW1 63 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 ZMAT5Q9UDW3 170 aaKnown RBP4.36□□□□□ -1.71
SYNE2-225ENST00000557060 HLA-DRB4X5D2U9 266 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 AZU1P20160 251 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 RPL39P62891 51 aaKnown RBP4.36□□□□□ -1.71
SYNE2-225ENST00000557060 Q8N8P6 123 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 SMIM2Q9BVW6 85 aa4.36□□□□□ -1.71
SYNE2-225ENST00000557060 FCER1GP30273 86 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 ANKRD39Q53RE8 183 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 PET117Q6UWS5 81 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 CLUHP3Q96NS8 147 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 NBEAL1Q6ZS30 2694 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 IGHV3-38A0A0C4DH36 116 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 KRTAP10-3P60369 221 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 SCGB2A2Q13296 93 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 GTSCR1Q86UQ5 136 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 SYT8Q8NBV8 401 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 SCGB3A1Q96QR1 104 aa4.35□□□□□ -1.71
SYNE2-225ENST00000557060 SPAG8Q99932 426 aaPredicted RBP4.35□□□□□ -1.71
SYNE2-225ENST00000557060 ANK3Q12955 4377 aaKnown RBP4.35□□□□□ -1.71
SYNE2-225ENST00000557060 SDHAF1A6NFY7 115 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 LINC01545Q5VT33 79 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 MRAP2Q96G30 205 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 ST20Q9HBF5 79 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 SCRT2Q9NQ03 307 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 MRPL35Q9NZE8 188 aaKnown RBP4.34□□□□□ -1.71
SYNE2-225ENST00000557060 IGHV4-4A0A075B6R2 117 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 TRGV1A0A0A0MS02 117 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 MPV17L2Q567V2 206 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 C2orf66Q6UXQ4 117 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 PCP2Q8IVA1 136 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 PHLDA1Q8WV24 401 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-225ENST00000557060 OPRPNQ99935 248 aaPredicted RBP4.34□□□□□ -1.71
SYNE2-225ENST00000557060 LAMTOR2Q9Y2Q5 125 aa4.34□□□□□ -1.71
SYNE2-225ENST00000557060 IGLV2-18A0A075B6J9 118 aa4.34□□□□□ -1.72
SYNE2-225ENST00000557060 TRAV8-6A0A0B4J262 113 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms