RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ODF1Q14990 250 aa10.61□□□□□ -0.71
VPS33A-209ENST00000544349 NDUFA11Q86Y39 141 aa10.61□□□□□ -0.71
VPS33A-209ENST00000544349 M0R381 172 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 DEFB131AP59861 70 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 ANXA2RQ3ZCQ2 193 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 PCP2Q8IVA1 136 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 DEFB125Q8N687 156 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 SPAG8Q99932 426 aaPredicted RBP10.6□□□□□ -0.71
VPS33A-209ENST00000544349 SORL1Q92673 2214 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 C12orf54Q6X4T0 127 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 BOD1L2Q8IYS8 172 aa10.6□□□□□ -0.71
VPS33A-209ENST00000544349 ZNF256Q9Y2P7 627 aaPredicted RBP10.6□□□□□ -0.71
VPS33A-209ENST00000544349 NSD1Q96L73 2696 aaPredicted RBP10.6□□□□□ -0.71
VPS33A-209ENST00000544349 AGRNO00468 2067 aa10.59□□□□□ -0.71
VPS33A-209ENST00000544349 IGKV3-20P01619 116 aa10.59□□□□□ -0.71
VPS33A-209ENST00000544349 SMIM15Q7Z3B0 74 aa10.59□□□□□ -0.71
VPS33A-209ENST00000544349 WNK1Q9H4A3 2382 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 MAP6D1Q9H9H5 199 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 IGKV2D-26A0A0A0MRZ7 120 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 CBY3A6NI87 242 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 NMUP48645 174 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 PTTG1IPP53801 180 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 RIPPLY3P57055 190 aa10.58□□□□□ -0.72
VPS33A-209ENST00000544349 KNCNA6PVL3 124 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 GNRH2O43555 120 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 ASIPP42127 132 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 CDKN1BP46527 198 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 UBE2V1Q13404 147 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 AMTNQ6UX39 209 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 TTTY13Q9BZ97 58 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 ZMAT4Q9H898 229 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 C7orf71A4D174 169 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 PRSS47A8MTI9 375 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 SAP30O75446 220 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 SMIM17P0DL12 118 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 HLA-DRB4P13762 266 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 RPL39LQ96EH5 51 aaKnown RBP10.57□□□□□ -0.72
VPS33A-209ENST00000544349 HLA-DRB4X5D2U9 266 aa10.57□□□□□ -0.72
VPS33A-209ENST00000544349 TRAV12-3A0A0B4J271 114 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 A8MTW9 85 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 RNASE3P12724 160 aaKnown RBP10.56□□□□□ -0.72
VPS33A-209ENST00000544349 LAGE3Q14657 143 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 SPINK13Q1W4C9 94 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 TMEM97Q5BJF2 176 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 C14orf178Q8N769 122 aaPredicted RBP10.56□□□□□ -0.72
VPS33A-209ENST00000544349 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.56□□□□□ -0.72
VPS33A-209ENST00000544349 RASL10AQ92737 203 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 SMIM2Q9BVW6 85 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 HHLA3Q9XRX5 114 aa10.56□□□□□ -0.72
VPS33A-209ENST00000544349 H3BMM0 161 aa10.55□□□□□ -0.72
VPS33A-209ENST00000544349 PRSS1P07477 247 aa10.55□□□□□ -0.72
VPS33A-209ENST00000544349 S100A4P26447 101 aaKnown RBP10.55□□□□□ -0.72
VPS33A-209ENST00000544349 MRAP2Q96G30 205 aa10.55□□□□□ -0.72
VPS33A-209ENST00000544349 TRAV12-2A0A075B6T6 113 aa10.55□□□□□ -0.72
VPS33A-209ENST00000544349 PHLDA3Q9Y5J5 127 aa10.55□□□□□ -0.72
VPS33A-209ENST00000544349 SETD2Q9BYW2 2564 aaPredicted RBP10.54□□□□□ -0.72
VPS33A-209ENST00000544349 C2CD3Q4AC94 2353 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 IGLV1-51P01701 117 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 MGPP08493 103 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 VAMP3Q15836 100 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 FAM159AQ6UWV7 190 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 F8P00451 2351 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 IGKCP01834 107 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 PF4P02776 101 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 ODF3L2Q3SX64 289 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 DPH3P1Q9H4G8 78 aa10.54□□□□□ -0.72
VPS33A-209ENST00000544349 TEP1Q99973 2627 aaKnown RBP10.53□□□□□ -0.72
VPS33A-209ENST00000544349 MED14OSP0DP75 135 aa10.53□□□□□ -0.72
VPS33A-209ENST00000544349 MRPL35Q9NZE8 188 aaKnown RBP10.53□□□□□ -0.72
VPS33A-209ENST00000544349 TRAV8-6A0A0B4J262 113 aa10.52□□□□□ -0.72
VPS33A-209ENST00000544349 RBMY1BA6NDE4 496 aaKnown RBP10.52□□□□□ -0.72
VPS33A-209ENST00000544349 RBMY1EA6NEQ0 496 aaKnown RBP10.52□□□□□ -0.72
VPS33A-209ENST00000544349 RBMY1DP0C7P1 496 aaKnown RBP10.52□□□□□ -0.72
VPS33A-209ENST00000544349 GTSCR1Q86UQ5 136 aa10.52□□□□□ -0.72
VPS33A-209ENST00000544349 LINC00482Q8N8I6 264 aa10.52□□□□□ -0.72
VPS33A-209ENST00000544349 DPM2O94777 84 aa10.52□□□□□ -0.73
VPS33A-209ENST00000544349 SUMO2P61956 95 aaKnown RBP10.52□□□□□ -0.73
VPS33A-209ENST00000544349 ATP5LO75964 103 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 HSD52Q0P140 79 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 ZC2HC1BQ5TFG8 222 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 JPT2Q9H910 190 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 OR11H12B2RN74 326 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 NXPH4O95158 308 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 SEC11AP67812 179 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 AMMECR1LQ6DCA0 310 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 NEGR1Q7Z3B1 354 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 AP1S3Q96PC3 154 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 CITED1Q99966 193 aa10.51□□□□□ -0.73
VPS33A-209ENST00000544349 CD7P09564 240 aa10.5□□□□□ -0.73
VPS33A-209ENST00000544349 CLUHP3Q96NS8 147 aa10.5□□□□□ -0.73
VPS33A-209ENST00000544349 IGHV1OR15-1A0A075B7D0 117 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 SIVA1O15304 175 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 CMC4P56277 68 aaPredicted RBP10.49□□□□□ -0.73
VPS33A-209ENST00000544349 LINC00315P59091 139 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 OR4C5Q8NGB2 326 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 KIF25-AS1Q9Y6Z4 181 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 A0A087WX48 190 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 K7EP13 123 aa10.49□□□□□ -0.73
VPS33A-209ENST00000544349 RBMY1A1P0DJD3 496 aaKnown RBP10.49□□□□□ -0.73
VPS33A-209ENST00000544349 RBMY1CP0DJD4 496 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms