RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 SLC25A29Q8N8R3 303 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 NUDT10Q8NFP7 164 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 NUDT11Q96G61 164 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 SFRP2Q96HF1 295 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 SMIM7Q9BQ49 75 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 PRADC1Q9BSG0 188 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 K7EN84 100 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 NXPH4O95158 308 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 RHOHQ15669 191 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 FAM74A3Q4VXF1 159 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 SPANXN1Q5VSR9 72 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 SH2D6Q7Z4S9 175 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 FER1L6-AS1Q8NA97 138 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 OR10AG1Q8NH19 301 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 SAMD10Q9BYL1 202 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 JPT2Q9H910 190 aa8.58□□□□□ -1.04
VPS33A-207ENST00000542790 DNAH1Q9P2D7 4330 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 A0A1W2PPQ1 181 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 F2Z2F3 143 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 IGLC6P0CF74 106 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 GZMBP10144 247 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 FAM74A4Q5TZK3 123 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 UFSP1Q6NVU6 142 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 FAM231DQ6ZW35 169 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 ZNRF2Q8NHG8 242 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 TPPP3Q9BW30 176 aa8.57□□□□□ -1.04
VPS33A-207ENST00000542790 RNASE7Q9H1E1 156 aaKnown RBP8.57□□□□□ -1.04
VPS33A-207ENST00000542790 RPP21Q9H633 154 aaKnown RBP8.57□□□□□ -1.04
VPS33A-207ENST00000542790 MRPS16Q9Y3D3 137 aaKnown RBP8.57□□□□□ -1.04
VPS33A-207ENST00000542790 IGLV2-18A0A075B6J9 118 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 A0A087WWL8 130 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 MUC21A0A0G2JKD1 596 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 MUC21A0A140T8X8 626 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 C9JQL5 133 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 CRYGDP07320 174 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 ERVFC1-1P60608 527 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 CACNG7P62955 275 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 TMEM241Q24JQ0 296 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 LYPD5Q6UWN5 251 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 LINC01551Q86U37 167 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 LYSTQ99698 3801 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 UPK3BQ9BT76 320 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 Q9H8V8 135 aa8.56□□□□□ -1.04
VPS33A-207ENST00000542790 LOC100131303A0A0U1RQF7 123 aa8.55□□□□□ -1.04
VPS33A-207ENST00000542790 GATCO43716 136 aaKnown RBP8.55□□□□□ -1.04
VPS33A-207ENST00000542790 SSTP61278 116 aa8.55□□□□□ -1.04
VPS33A-207ENST00000542790 SRSF3P84103 164 aaKnown RBP8.55□□□□□ -1.04
VPS33A-207ENST00000542790 Q6ZSN1 163 aa8.55□□□□□ -1.04
VPS33A-207ENST00000542790 HYDINQ4G0P3 5121 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 M0R2N4 97 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 SMIM17P0DL12 118 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 LYZL1Q6UWQ5 148 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 AP1S3Q96PC3 154 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 KRTAP9-9Q9BYP9 154 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 KRTAP9-4Q9BYQ2 154 aa8.54□□□□□ -1.04
VPS33A-207ENST00000542790 A8MWL6 223 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 TIRAPP58753 221 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 RAB4BP61018 213 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 CT83Q5H943 113 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 SOHLH1Q5JUK2 328 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 CLLU1Q5K131 121 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 WDR73Q6P4I2 378 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 Q6ZR54 194 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 C14orf178Q8N769 122 aaPredicted RBP8.53□□□□□ -1.04
VPS33A-207ENST00000542790 NAT8Q9UHE5 227 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 MUC4Q99102 2169 aa8.53□□□□□ -1.04
VPS33A-207ENST00000542790 TRBV10-1A0A0K0K1A3 114 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 NBDYA0A0U1RRE5 68 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 CTRLP40313 264 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 C15orf54Q8N8G6 183 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 ATP6V0E2Q8NHE4 81 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 OSTCQ9NRP0 149 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 VPS13DQ5THJ4 4388 aa8.52□□□□□ -1.05
VPS33A-207ENST00000542790 GAGE12JA6NER3 117 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 F5H697 171 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 SIVA1O15304 175 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 TRGC1P0CF51 173 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 NTF3P20783 257 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 RPL23P62829 140 aaKnown RBP8.51□□□□□ -1.05
VPS33A-207ENST00000542790 IFITM2Q01629 132 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 GAGE1Q13065 139 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 GAGE4Q13068 117 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 GAGE5Q13069 117 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 ZNF56Q15929 161 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 GAGE13Q4V321 117 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 TTC32Q5I0X7 151 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 GTSF1Q8WW33 167 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 CNFNQ9BYD5 112 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 MSRB1Q9NZV6 116 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 KIF25-AS1Q9Y6Z4 181 aa8.51□□□□□ -1.05
VPS33A-207ENST00000542790 FOXA3P55318 350 aaPredicted RBP8.5□□□□□ -1.05
VPS33A-207ENST00000542790 TWIST1Q15672 202 aa8.5□□□□□ -1.05
VPS33A-207ENST00000542790 ADIRFQ15847 76 aa8.5□□□□□ -1.05
VPS33A-207ENST00000542790 TSKUQ8WUA8 353 aa8.5□□□□□ -1.05
VPS33A-207ENST00000542790 ISOC2Q96AB3 205 aa8.5□□□□□ -1.05
VPS33A-207ENST00000542790 GTSF1LQ9H1H1 148 aa8.5□□□□□ -1.05
VPS33A-207ENST00000542790 TRAV8-6A0A0B4J262 113 aa8.49□□□□□ -1.05
VPS33A-207ENST00000542790 FAM231BA6NCW3 169 aa8.49□□□□□ -1.05
VPS33A-207ENST00000542790 LINC00694P0DN24 101 aa8.49□□□□□ -1.05
VPS33A-207ENST00000542790 LINC00315P59091 139 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms