RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 ZNF493Q6ZR52 646 aa10.92□□□□□ -0.66
SFSWAP-210ENST00000541286 CDIP1Q9H305 208 aa10.92□□□□□ -0.66
SFSWAP-210ENST00000541286 IGHG4P01861 327 aa10.92□□□□□ -0.66
SFSWAP-210ENST00000541286 SPANXN1Q5VSR9 72 aa10.92□□□□□ -0.66
SFSWAP-210ENST00000541286 TRBV6-1A0A0K0K1D8 114 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 LINC01549A6NIU2 74 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 DPM2O94777 84 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 SMCPP49901 116 aaPredicted RBP10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 C3orf56Q8N813 242 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 Q8N9W7 124 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 DPF1Q92782 380 aa10.91□□□□□ -0.66
SFSWAP-210ENST00000541286 HOXA3O43365 443 aaPredicted RBP10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 TMEM78Q5T7P6 136 aa10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 ANAPC13Q9BS18 74 aa10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 SHISA2Q6UWI4 295 aa10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 C10orf99Q6UWK7 81 aa10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 AGPAT4-IT1Q9H0P7 198 aa10.9□□□□□ -0.66
SFSWAP-210ENST00000541286 H7C2G1 150 aa10.9□□□□□ -0.67
SFSWAP-210ENST00000541286 RRN3P1Q2M238 152 aa10.9□□□□□ -0.67
SFSWAP-210ENST00000541286 PRO0461Q9UI25 63 aa10.9□□□□□ -0.67
SFSWAP-210ENST00000541286 M0R381 172 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 C16orf92Q96LL3 132 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 IGHV3-11P01762 117 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 KLHL30-AS1Q8NEE0 82 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 TM2D2Q9BX73 214 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 C11orf21Q9P2W6 132 aa10.89□□□□□ -0.67
SFSWAP-210ENST00000541286 BUB3O43684 328 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 RNF185Q96GF1 192 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 ESM1Q9NQ30 184 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 IGF1P05019 195 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 SRSF9Q13242 221 aaKnown RBP eCLIP10.88□□□□□ -0.672e-6■□□□□ 9
SFSWAP-210ENST00000541286 Q6ZUT4 128 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 IGKV3D-20A0A0C4DH25 116 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 IGLC6P0CF74 106 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 SCGB1D4Q6XE38 83 aa10.88□□□□□ -0.67
SFSWAP-210ENST00000541286 S100A4P26447 101 aaKnown RBP10.87□□□□□ -0.67
SFSWAP-210ENST00000541286 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.87□□□□□ -0.67
SFSWAP-210ENST00000541286 METTL26Q96S19 204 aa10.87□□□□□ -0.67
SFSWAP-210ENST00000541286 SRD5A1P18405 259 aa10.87□□□□□ -0.67
SFSWAP-210ENST00000541286 MORN3Q6PF18 240 aaPredicted RBP10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 C11orf44Q8N8P7 122 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 ZNF502Q8TBZ5 544 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 MYOZ3Q8TDC0 251 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 U3KQK5 164 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 TCTEX1D4Q5JR98 221 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 CCDC140Q96MF4 163 aa10.86□□□□□ -0.67
SFSWAP-210ENST00000541286 MGPP08493 103 aa10.85□□□□□ -0.67
SFSWAP-210ENST00000541286 SCGB1C2P0DMR2 95 aa10.85□□□□□ -0.67
SFSWAP-210ENST00000541286 CARD19Q96LW7 228 aa10.85□□□□□ -0.67
SFSWAP-210ENST00000541286 PKD1L1Q8TDX9 2849 aa10.85□□□□□ -0.67
SFSWAP-210ENST00000541286 PLEKHB2Q96CS7 222 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 C1QTNF4Q9BXJ3 329 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 HIGD1BQ9P298 99 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 GATD1Q8NB37 220 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 EEF1AKMT3Q96AZ1 226 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 F6UB75 175 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 ZNF575Q86XF7 245 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 Q8N6K4 173 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 FAM110DQ8TAY7 271 aaPredicted RBP10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 ZFAND3Q9H8U3 227 aa10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 NXT2Q9NPJ8 142 aaKnown RBP10.84□□□□□ -0.67
SFSWAP-210ENST00000541286 MINOS1Q5TGZ0 78 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 SMIM20Q8N5G0 67 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 MINOS1-NBL1R4GNA1 71 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 FSHBP01225 129 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 TRBV12-3P01733 135 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 RAX2Q96IS3 184 aa10.83□□□□□ -0.68
SFSWAP-210ENST00000541286 OR11H12B2RN74 326 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 OR11H1Q8NG94 326 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 OR11H2Q8NH07 326 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 CLPSL1A2RUU4 121 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 HERV-K104P63124 156 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 C14orf178Q8N769 122 aaPredicted RBP10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 CFAP126Q5VTH2 177 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 ZMAT4Q9H898 229 aa10.82□□□□□ -0.68
SFSWAP-210ENST00000541286 SLC50A1Q9BRV3 221 aa10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 TRAV8-2A0A0B4J237 113 aa10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 ZNF815PA8K554 130 aa10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 PRR9Q5T870 116 aa10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 UNQ9165/PRO28630Q6UXU0 137 aa10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 DLX4Q92988 240 aaPredicted RBP10.81□□□□□ -0.68
SFSWAP-210ENST00000541286 ERG28Q9UKR5 140 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 RNASE4P34096 147 aaKnown RBP10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 ARL3P36405 182 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 LINC01559Q495D7 138 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 TRBV7-3A0A075B6L6 115 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 MYMXA0A1B0GTQ4 84 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 CCDC179H3BU77 68 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 PF4V1P10720 104 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 LAGE3Q14657 143 aa10.8□□□□□ -0.68
SFSWAP-210ENST00000541286 DNAJC9-AS1A6NH13 148 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 J3QLI3 93 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 TSPAN13O95857 204 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 TCL1BO95988 128 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 CRIP2P52943 208 aaPredicted RBP10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 TEX29Q8N6K0 151 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 C5orf56Q8N8D9 126 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 PHLDA3Q9Y5J5 127 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 OOSP1A8MZH6 123 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 CRLF1O75462 422 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms