RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SYT8Q8NBV8 401 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 LYPD6BQ8NI32 183 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 SMIM12Q96EX1 92 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 OR5AL1P0C617 328 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 CENPWQ5EE01 88 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 LINC01556Q5JQF7 62 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 ZFP82Q8N141 532 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 GTSF1LQ9H1H1 148 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 TNFRSF18Q9Y5U5 241 aa9.6□□□□□ -0.87
USP28-209ENST00000540925 RAB19A4D1S5 217 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 C19orf71A6NCJ1 209 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 M0R381 172 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 IFNA1P01562 189 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 LELP1Q5T871 98 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 OR10AG1Q8NH19 301 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 ATP6V0E2Q8NHE4 81 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 VAX2Q9UIW0 290 aa9.59□□□□□ -0.87
USP28-209ENST00000540925 TRAV9-2A0A087WT02 112 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 A0A087WWL8 130 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 IGHV3-38A0A0C4DH36 116 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 EVI2AP22794 236 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 TAGLN2P37802 199 aaKnown RBP9.58□□□□□ -0.88
USP28-209ENST00000540925 PRR27Q6MZM9 219 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 ALKAL2Q6UX46 152 aa9.58□□□□□ -0.88
USP28-209ENST00000540925 IGLC6P0CF74 106 aa9.57□□□□□ -0.88
USP28-209ENST00000540925 GNG4P50150 75 aa9.57□□□□□ -0.88
USP28-209ENST00000540925 MSRB1Q9NZV6 116 aa9.57□□□□□ -0.88
USP28-209ENST00000540925 BOLA1Q9Y3E2 137 aa9.57□□□□□ -0.88
USP28-209ENST00000540925 GAGE12JA6NER3 117 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 NKX2-5P52952 324 aaPredicted RBP9.56□□□□□ -0.88
USP28-209ENST00000540925 KRTAP10-2P60368 255 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 GAGE1Q13065 139 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 GAGE4Q13068 117 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 GAGE5Q13069 117 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 GAGE13Q4V321 117 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 FAM74A4Q5TZK3 123 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 NFE4Q86UQ8 179 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 C10orf126Q8N4M7 172 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 MED9Q9NWA0 146 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 KIF25-AS1Q9Y6Z4 181 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 DNAH8Q96JB1 4490 aa9.56□□□□□ -0.88
USP28-209ENST00000540925 TRAV8-6A0A0B4J262 113 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 TRBV10-1A0A0K0K1A3 114 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 IBA57-AS1B1ANH7 110 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 BLOC1S1P78537 153 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 OR10J3Q5JRS4 329 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 SPATA12Q7Z6I5 190 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 OR10G8Q8NGN5 311 aa9.55□□□□□ -0.88
USP28-209ENST00000540925 C16orf90A8MZG2 172 aa9.54□□□□□ -0.88
USP28-209ENST00000540925 RAB4BP61018 213 aa9.54□□□□□ -0.88
USP28-209ENST00000540925 MUC21A0A0G2JKD1 596 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 MUC21A0A140T8X8 626 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 GZMBP10144 247 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 UBE2D3P61077 147 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 UBE2D2P62837 147 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 Q8N3U1 123 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 OR2D3Q8NGH3 330 aa9.53□□□□□ -0.88
USP28-209ENST00000540925 A0A087WWC5 75 aa9.52□□□□□ -0.89
USP28-209ENST00000540925 RBFOX3A6NFN3 312 aa9.52□□□□□ -0.89
USP28-209ENST00000540925 TMEM250H0YL14 139 aa9.52□□□□□ -0.89
USP28-209ENST00000540925 K7EN84 100 aa9.52□□□□□ -0.89
USP28-209ENST00000540925 RPS20P60866 119 aaKnown RBP9.52□□□□□ -0.89
USP28-209ENST00000540925 SPANXN1Q5VSR9 72 aa9.52□□□□□ -0.89
USP28-209ENST00000540925 TRBV7-3A0A075B6L6 115 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 A0A087WTM6 91 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 NDUFS6O75380 124 aaKnown RBP9.51□□□□□ -0.89
USP28-209ENST00000540925 P01737 135 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 LAGE3Q14657 143 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 FER1L6-AS1Q8NA97 138 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 NEXN-AS1Q8NBZ9 246 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 NUDT10Q8NFP7 164 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 OCC1Q8TAD7 63 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 DAZAP1Q96EP5 407 aaKnown RBP9.51□□□□□ -0.89
USP28-209ENST00000540925 NUDT11Q96G61 164 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 BIN3Q9NQY0 253 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 HERC1Q15751 4861 aa9.51□□□□□ -0.89
USP28-209ENST00000540925 CDK2AP2O75956 126 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 IGHV3-30P01768 117 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 IGHV3-33P01772 117 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 IGHV3-30-3P0DP02 117 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 IGHV3-30-5P0DP03 117 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 ERVFC1-1P60608 527 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 AP1S3Q96PC3 154 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 KRTAP4-5Q9BYR2 181 aa9.5□□□□□ -0.89
USP28-209ENST00000540925 LRCOL1A6NCL2 159 aa9.49□□□□□ -0.89
USP28-209ENST00000540925 F2Z2F3 143 aa9.49□□□□□ -0.89
USP28-209ENST00000540925 CTRLP40313 264 aa9.49□□□□□ -0.89
USP28-209ENST00000540925 RPL36AP83881 106 aaKnown RBP9.49□□□□□ -0.89
USP28-209ENST00000540925 RPL36ALQ969Q0 106 aaKnown RBP9.49□□□□□ -0.89
USP28-209ENST00000540925 CNFNQ9BYD5 112 aa9.49□□□□□ -0.89
USP28-209ENST00000540925 FAT1Q14517 4588 aa9.49□□□□□ -0.89
USP28-209ENST00000540925 XKRY2A2RUG3 117 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 CACNG7P62955 275 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 ZNF56Q15929 161 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 WDR73Q6P4I2 378 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 LYZL1Q6UWQ5 148 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 NIT1Q86X76 327 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 FAM210AQ96ND0 272 aa9.48□□□□□ -0.89
USP28-209ENST00000540925 SSTP61278 116 aa9.47□□□□□ -0.89
USP28-209ENST00000540925 TOR2AQ5JU69 321 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms