RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 TPPP3Q9BW30 176 aa6.34□□□□□ -1.39
SNHG1-215ENST00000540904 BIN3Q9NQY0 253 aa6.34□□□□□ -1.39
SNHG1-215ENST00000540904 KMT2AQ03164 3969 aa6.34□□□□□ -1.39
SNHG1-215ENST00000540904 SIVA1O15304 175 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 SNAI2O43623 268 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 OR5AL1P0C617 328 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 RPS20P60866 119 aaKnown RBP6.33□□□□□ -1.4
SNHG1-215ENST00000540904 TTC32Q5I0X7 151 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 SOHLH1Q5JUK2 328 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 SPANXN1Q5VSR9 72 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 UFSP1Q6NVU6 142 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 LINC00336Q6ZUF6 198 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 C14orf178Q8N769 122 aaPredicted RBP6.33□□□□□ -1.4
SNHG1-215ENST00000540904 FAM210AQ96ND0 272 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 SSBP4Q9BWG4 385 aaPredicted RBP6.33□□□□□ -1.4
SNHG1-215ENST00000540904 NACAE9PAV3 2078 aa6.33□□□□□ -1.4
SNHG1-215ENST00000540904 XKRY2A2RUG3 117 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 GAGE12JA6NER3 117 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 PRSS29PA6NIE9 313 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 K7EN84 100 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 CRYGDP07320 174 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 GAGE1Q13065 139 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 GAGE4Q13068 117 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 GAGE5Q13069 117 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 GAGE13Q4V321 117 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 C6orf223Q8N319 242 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 FER1L6-AS1Q8NA97 138 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 NUDT10Q8NFP7 164 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 OCC1Q8TAD7 63 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 NUDT11Q96G61 164 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 KRTAP1-5Q9BYS1 174 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 RNASE7Q9H1E1 156 aaKnown RBP6.32□□□□□ -1.4
SNHG1-215ENST00000540904 Q9UF83 564 aa6.32□□□□□ -1.4
SNHG1-215ENST00000540904 WFDC10BQ8IUB3 73 aa6.31□□□□□ -1.4
SNHG1-215ENST00000540904 ATP6V0E2Q8NHE4 81 aa6.31□□□□□ -1.4
SNHG1-215ENST00000540904 SMIM7Q9BQ49 75 aa6.31□□□□□ -1.4
SNHG1-215ENST00000540904 A0A1W2PPQ1 181 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 SRP19P09132 144 aaKnown RBP6.3□□□□□ -1.4
SNHG1-215ENST00000540904 IGLC6P0CF74 106 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 TIRAPP58753 221 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 ZNF56Q15929 161 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 GTSF1LQ9H1H1 148 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 RPP21Q9H633 154 aaKnown RBP6.3□□□□□ -1.4
SNHG1-215ENST00000540904 LY96Q9Y6Y9 160 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 VPS13DQ5THJ4 4388 aa6.3□□□□□ -1.4
SNHG1-215ENST00000540904 TRAV8-6A0A0B4J262 113 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 ZNF727A8MUV8 499 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 F2Z2F3 143 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 F5H697 171 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 NDUFS6O75380 124 aaKnown RBP6.29□□□□□ -1.4
SNHG1-215ENST00000540904 SMIM17P0DL12 118 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 RAB4BP61018 213 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 OR10J3Q5JRS4 329 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 LYZL1Q6UWQ5 148 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 AP1S3Q96PC3 154 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 MSRB1Q9NZV6 116 aa6.29□□□□□ -1.4
SNHG1-215ENST00000540904 TRAV9-2A0A087WT02 112 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 IGHV3-38A0A0C4DH36 116 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 C9JQL5 133 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 GATCO43716 136 aaKnown RBP6.28□□□□□ -1.4
SNHG1-215ENST00000540904 DNAH10OSP0CZ25 163 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 LINC00694P0DN24 101 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 EVI2AP22794 236 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 LINC00315P59091 139 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 ERVFC1-1P60608 527 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 CACNG7P62955 275 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 RPL36AP83881 106 aaKnown RBP6.28□□□□□ -1.4
SNHG1-215ENST00000540904 SRSF3P84103 164 aaKnown RBP6.28□□□□□ -1.4
SNHG1-215ENST00000540904 TNP2Q05952 138 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 PEA15Q15121 130 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 LELP1Q5T871 98 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 LINC01551Q86U37 167 aa6.28□□□□□ -1.4
SNHG1-215ENST00000540904 RPL36ALQ969Q0 106 aaKnown RBP6.28□□□□□ -1.4
SNHG1-215ENST00000540904 TRBV7-3A0A075B6L6 115 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 TRBV10-1A0A0K0K1A3 114 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 A0A1B0GVY2 172 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 MGPP08493 103 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 NTF3P20783 257 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 CTRLP40313 264 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 FAM231DQ6ZW35 169 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 TNFRSF18Q9Y5U5 241 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 KIF25-AS1Q9Y6Z4 181 aa6.27□□□□□ -1.41
SNHG1-215ENST00000540904 A0A087WWC5 75 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 A8MWL6 223 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 K7EP13 123 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 IGHV3-30P01768 117 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 IGHV3-33P01772 117 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 TRGC1P0CF51 173 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 IGHV3-30-3P0DP02 117 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 IGHV3-30-5P0DP03 117 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 BTF3P20290 206 aaKnown RBP6.26□□□□□ -1.41
SNHG1-215ENST00000540904 TWIST1Q15672 202 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 TMEM241Q24JQ0 296 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 NEXN-AS1Q8NBZ9 246 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 GTSF1Q8WW33 167 aa6.26□□□□□ -1.41
SNHG1-215ENST00000540904 UBE2D3P61077 147 aa6.25□□□□□ -1.41
SNHG1-215ENST00000540904 RAB14P61106 215 aa6.25□□□□□ -1.41
SNHG1-215ENST00000540904 UBE2D2P62837 147 aa6.25□□□□□ -1.41
SNHG1-215ENST00000540904 FAM74A3Q4VXF1 159 aa6.25□□□□□ -1.41
SNHG1-215ENST00000540904 LINC01556Q5JQF7 62 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms