RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 GATD1Q8NB37 220 aa6.71□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3OR16-8A0A075B7F1 116 aa6.71□□□□□ -1.34
DDB1-217ENST00000540166 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.71□□□□□ -1.34
DDB1-217ENST00000540166 TIMM23O14925 209 aa6.71□□□□□ -1.34
DDB1-217ENST00000540166 C2orf66Q6UXQ4 117 aa6.71□□□□□ -1.34
DDB1-217ENST00000540166 ZMAT4Q9H898 229 aa6.71□□□□□ -1.34
DDB1-217ENST00000540166 CENPVL3A0A0U1RRI6 287 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 SMCPP49901 116 aaPredicted RBP6.7□□□□□ -1.34
DDB1-217ENST00000540166 C5orf47Q569G3 176 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 Q8N1Y9 231 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 TNFRSF18Q9Y5U5 241 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 INS-IGF2F8WCM5 200 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 CFC1BP0CG36 223 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 CFC1P0CG37 223 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 TRPT1Q86TN4 253 aaKnown RBP6.7□□□□□ -1.34
DDB1-217ENST00000540166 RITA1Q96K30 269 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 SIGLEC9Q9Y336 463 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 UTP20O75691 2785 aaKnown RBP6.7□□□□□ -1.34
DDB1-217ENST00000540166 IGHV1-8P0DP01 117 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.7□□□□□ -1.34
DDB1-217ENST00000540166 CHCHD5Q9BSY4 110 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 SMIM2Q9BVW6 85 aa6.7□□□□□ -1.34
DDB1-217ENST00000540166 H3BRN7 92 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3-23P01764 117 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 MRPL23Q16540 153 aaKnown RBP6.69□□□□□ -1.34
DDB1-217ENST00000540166 EDA2RQ9HAV5 297 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 PF4P02776 101 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 PF4V1P10720 104 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 C11orf44Q8N8P7 122 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 APCP25054 2843 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 TRAV12-1A0A0B4J245 112 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 FAM236AA0A1B0GUQ0 79 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 FAM236BA0A1B0GV22 79 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 PPP1R17O96001 155 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 SUMO2P61956 95 aaKnown RBP6.69□□□□□ -1.34
DDB1-217ENST00000540166 LINC01620Q4KN68 170 aa6.69□□□□□ -1.34
DDB1-217ENST00000540166 LMO4P61968 165 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 RPL11P62913 178 aaKnown RBP6.68□□□□□ -1.34
DDB1-217ENST00000540166 ERCC8Q13216 396 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 TEX36Q5VZQ5 186 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 PLEKHB2Q96CS7 222 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3-64A0A075B6Q5 118 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 IGHV1-3A0A0C4DH29 117 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 LINC01619G3V211 115 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 DEFB104AQ8WTQ1 72 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 VPREB3Q9UKI3 123 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3OR16-13A0A075B7E8 117 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3-74A0A0B4J1X5 117 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 TEX49A0A1B0GTD5 131 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 J3KT08 172 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 GAS8-AS1O95177 125 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 FSTL3O95633 263 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 GAGE2AQ6NT46 116 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 Q6ZQT7 251 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 FAM110DQ8TAY7 271 aaPredicted RBP6.68□□□□□ -1.34
DDB1-217ENST00000540166 AJUBAQ96IF1 538 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 MDFIQ99750 246 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 SPXQ9BT56 116 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 PPDPFQ9H3Y8 114 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 C21orf62Q9NYP8 219 aa6.68□□□□□ -1.34
DDB1-217ENST00000540166 A4D1N5 150 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 IGKV1-17P01599 117 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 FHL3Q13643 280 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 Q6Q795 121 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 ZNF491Q8N8L2 437 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 SLC50A1Q9BRV3 221 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 HOXB4P17483 251 aaPredicted RBP6.67□□□□□ -1.34
DDB1-217ENST00000540166 TRGV3P03979 118 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 CD7P09564 240 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 UBE2D3P61077 147 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 UBE2D2P62837 147 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 RNF185Q96GF1 192 aa6.67□□□□□ -1.34
DDB1-217ENST00000540166 IGHV3-66A0A0C4DH42 116 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 ZFP36P26651 326 aaKnown RBP6.66□□□□□ -1.34
DDB1-217ENST00000540166 RUSC1-AS1Q66K80 236 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 TRAV8-3A0A0A6YYJ7 113 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 M0R2P5 195 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 IGLV2-23P01705 113 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 IGLC6P0CF74 106 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 UBE2D1P51668 147 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 C14orf178Q8N769 122 aaPredicted RBP6.66□□□□□ -1.34
DDB1-217ENST00000540166 TRAV12-3A0A0B4J271 114 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 J3QQQ9 107 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 HILS1P60008 231 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 DEFB112Q30KQ8 113 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 NSUN5P1Q3KNT7 163 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 KRTAP24-1Q3LI83 254 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 LINC00311Q8N616 119 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 CTSZQ9UBR2 303 aa6.66□□□□□ -1.34
DDB1-217ENST00000540166 ZNF80P51504 273 aaPredicted RBP6.65□□□□□ -1.34
DDB1-217ENST00000540166 VMO1Q7Z5L0 202 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 PRIMA1Q86XR5 153 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 DUX3Q96PT4 197 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 IGHV1-69DA0A0B4J2H0 117 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 TRBV10-2A0A0K0K1G8 114 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 NPFFO15130 113 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 IGHV1-69P01742 117 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 NHLRC4P0CG21 123 aaPredicted RBP6.65□□□□□ -1.34
DDB1-217ENST00000540166 C16orf92Q96LL3 132 aa6.65□□□□□ -1.34
DDB1-217ENST00000540166 SMG1Q96Q15 3661 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms