RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 GSN-AS1Q9NRJ2 163 aa10.88□□□□□ -0.67
CHMP4A-207ENST00000533523 GAGE12BA1L429 117 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 GAGE7O76087 117 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 GAGE12FP0CL80 117 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 GAGE12GP0CL81 117 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 GAGE12IP0CL82 117 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 GZMBP10144 247 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 TCL1AP56279 114 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 RPS20P60866 119 aaKnown RBP10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 ZNF415Q09FC8 603 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 CT83Q5H943 113 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 FAM159AQ6UWV7 190 aa10.87□□□□□ -0.67
CHMP4A-207ENST00000533523 A8MWL6 223 aa10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 HOXA5P20719 270 aa10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 KCNS1Q96KK3 526 aa10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 C18orf15Q96N68 181 aa10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 UPK3BQ9BT76 320 aa10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 MRPS16Q9Y3D3 137 aaKnown RBP10.86□□□□□ -0.67
CHMP4A-207ENST00000533523 TRGV11A0A075B6L2 103 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 TRGV2A0A075B6R0 118 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 TRGV1A0A0A0MS02 117 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 A0A1W2PPQ1 181 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 XKRY2A2RUG3 117 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 GRIFINA4D1Z8 144 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 CXCL1P09341 107 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 BTF3P20290 206 aaKnown RBP10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 ESRGQ1W209 222 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 TDRG1Q3Y452 100 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 Q6ZTI0 123 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 TSKUQ8WUA8 353 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 TMEM242Q9NWH2 141 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 IL36BQ9NZH7 164 aa10.85□□□□□ -0.67
CHMP4A-207ENST00000533523 GNRH2O43555 120 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 SPINK4O60575 86 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 SCO1O75880 301 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 TYMSP04818 313 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 LINC00315P59091 139 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 TP53TG3Q9ULZ0 132 aa10.84□□□□□ -0.67
CHMP4A-207ENST00000533523 ASIPP42127 132 aa10.83□□□□□ -0.68
CHMP4A-207ENST00000533523 SMIM27A0A1W2PRY6 76 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 EPM2AB3EWF7 344 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 DNLZQ5SXM8 178 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 CBLN2Q8IUK8 224 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 GTSF1Q8WW33 167 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 IMMP2LQ96T52 175 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 SPXQ9BT56 116 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 GFRA4Q9GZZ7 299 aa10.82□□□□□ -0.68
CHMP4A-207ENST00000533523 IGHV3-16A0A0C4DH30 117 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 FAM231BA6NCW3 169 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 HIGD1CA8MV81 97 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 H3BNG1 76 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 H3BVH4 76 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 IGLC6P0CF74 106 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 S100A4P26447 101 aaKnown RBP10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 FER1L6-AS1Q8NA97 138 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 PGLYRP4Q96LB8 373 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 TPPP3Q9BW30 176 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 SMCO4Q9NRQ5 59 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 URGCP-MRPS24S4R325 110 aa10.81□□□□□ -0.68
CHMP4A-207ENST00000533523 S100PP25815 95 aa10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 FUSP35637 526 aaKnown RBP eCLIP10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 KCNIP4Q6PIL6 250 aa10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 NUP35Q8NFH5 326 aa10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 MRPL16Q9NX20 251 aaKnown RBP10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 MDFICQ9P1T7 246 aa10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 NAT8BQ9UHF3 227 aa10.8□□□□□ -0.68
CHMP4A-207ENST00000533523 ARMS2P0C7Q2 107 aa10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 RNASE3P12724 160 aaKnown RBP10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 CTRLP40313 264 aa10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 FOXA3P55318 350 aaPredicted RBP10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 LYZL1Q6UWQ5 148 aa10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 DNAH8Q96JB1 4490 aa10.79□□□□□ -0.68
CHMP4A-207ENST00000533523 A0A096LPF7 62 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 EREGO14944 169 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 SNAI2O43623 268 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 OR5AL1P0C617 328 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 SLAQ13239 276 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 Q6ZRN7 208 aaPredicted RBP10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 VSIG2Q96IQ7 327 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 C9orf85Q96MD7 179 aa10.78□□□□□ -0.68
CHMP4A-207ENST00000533523 MUC21A0A0G2JKD1 596 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 MUC21A0A140T8X8 626 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 F2Z2F3 143 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 SIVA1O15304 175 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 RASL10AQ92737 203 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 YPEL4Q96NS1 127 aa10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 SSBP4Q9BWG4 385 aaPredicted RBP10.77□□□□□ -0.69
CHMP4A-207ENST00000533523 LRP1Q07954 4544 aaKnown RBP10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 TRAV9-1A0A075B6T8 112 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 M0R2P5 195 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 NXPH4O95158 308 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 INAFM2P0DMQ5 153 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 ELOBQ15370 118 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 OR10AG1Q8NH19 301 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 BORCS7Q96B45 105 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 BTF3L4Q96K17 158 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 PHLDA3Q9Y5J5 127 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 ICOSQ9Y6W8 199 aa10.76□□□□□ -0.69
CHMP4A-207ENST00000533523 TGIF2-C20orf24A0A0A6YYL0 155 aa10.75□□□□□ -0.69
CHMP4A-207ENST00000533523 A0A1B0GUT8 65 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms