RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RHODO00212 210 aa13.62□□□□□ -0.23
CPSF1-209ENST00000532725 CEBPGP53567 150 aa13.62□□□□□ -0.23
CPSF1-209ENST00000532725 Q9UF83 564 aa13.62□□□□□ -0.23
CPSF1-209ENST00000532725 DNAH17Q9UFH2 4485 aa13.61□□□□□ -0.23
CPSF1-209ENST00000532725 FAM74A4Q5TZK3 123 aa13.61□□□□□ -0.23
CPSF1-209ENST00000532725 C14orf178Q8N769 122 aaPredicted RBP13.61□□□□□ -0.23
CPSF1-209ENST00000532725 RNASE7Q9H1E1 156 aaKnown RBP13.61□□□□□ -0.23
CPSF1-209ENST00000532725 LY96Q9Y6Y9 160 aa13.61□□□□□ -0.23
CPSF1-209ENST00000532725 XKRY2A2RUG3 117 aa13.6□□□□□ -0.23
CPSF1-209ENST00000532725 RTL8CO15255 209 aa13.6□□□□□ -0.23
CPSF1-209ENST00000532725 SPANXN1Q5VSR9 72 aa13.6□□□□□ -0.23
CPSF1-209ENST00000532725 FER1L6-AS1Q8NA97 138 aa13.6□□□□□ -0.23
CPSF1-209ENST00000532725 C9JQL5 133 aa13.59□□□□□ -0.23
CPSF1-209ENST00000532725 SIVA1O15304 175 aa13.59□□□□□ -0.23
CPSF1-209ENST00000532725 TIRAPP58753 221 aa13.59□□□□□ -0.23
CPSF1-209ENST00000532725 SSTP61278 116 aa13.59□□□□□ -0.23
CPSF1-209ENST00000532725 SRSF3P84103 164 aaKnown RBP13.59□□□□□ -0.23
CPSF1-209ENST00000532725 SMIM7Q9BQ49 75 aa13.59□□□□□ -0.23
CPSF1-209ENST00000532725 ZNF727A8MUV8 499 aa13.58□□□□□ -0.24
CPSF1-209ENST00000532725 F2Z2F3 143 aa13.58□□□□□ -0.24
CPSF1-209ENST00000532725 C1orf134Q5TEV5 83 aa13.58□□□□□ -0.24
CPSF1-209ENST00000532725 KRTAP1-5Q9BYS1 174 aa13.58□□□□□ -0.24
CPSF1-209ENST00000532725 RPP21Q9H633 154 aaKnown RBP13.58□□□□□ -0.24
CPSF1-209ENST00000532725 LINC00694P0DN24 101 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 PEA15Q15121 130 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 LYZL1Q6UWQ5 148 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 LINC00336Q6ZUF6 198 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 FAM231DQ6ZW35 169 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 TPPP3Q9BW30 176 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 SMDT1Q9H4I9 107 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 KIF25-AS1Q9Y6Z4 181 aa13.57□□□□□ -0.24
CPSF1-209ENST00000532725 FAT2Q9NYQ8 4349 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 A0A1W2PPQ1 181 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 GAGE12JA6NER3 117 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 CACNG7P62955 275 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 GAGE1Q13065 139 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 GAGE4Q13068 117 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 GAGE5Q13069 117 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 GAGE13Q4V321 117 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 LINC01551Q86U37 167 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 ATP6V0E2Q8NHE4 81 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 MSRB1Q9NZV6 116 aa13.56□□□□□ -0.24
CPSF1-209ENST00000532725 LINC00315P59091 139 aa13.55□□□□□ -0.24
CPSF1-209ENST00000532725 RAB4BP61018 213 aa13.55□□□□□ -0.24
CPSF1-209ENST00000532725 WDR73Q6P4I2 378 aa13.55□□□□□ -0.24
CPSF1-209ENST00000532725 GTSF1LQ9H1H1 148 aa13.55□□□□□ -0.24
CPSF1-209ENST00000532725 GATCO43716 136 aaKnown RBP13.54□□□□□ -0.24
CPSF1-209ENST00000532725 FAM74A3Q4VXF1 159 aa13.54□□□□□ -0.24
CPSF1-209ENST00000532725 TTC32Q5I0X7 151 aa13.54□□□□□ -0.24
CPSF1-209ENST00000532725 TRBV10-1A0A0K0K1A3 114 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 NTF3P20783 257 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 CTRLP40313 264 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 ERVFC1-1P60608 527 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 TMEM241Q24JQ0 296 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 SOHLH1Q5JUK2 328 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 WFDC10BQ8IUB3 73 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 C6orf223Q8N319 242 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 GTSF1Q8WW33 167 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 CNFNQ9BYD5 112 aa13.53□□□□□ -0.24
CPSF1-209ENST00000532725 AP1S3Q96PC3 154 aa13.52□□□□□ -0.25
CPSF1-209ENST00000532725 PRSS29PA6NIE9 313 aa13.51□□□□□ -0.25
CPSF1-209ENST00000532725 DNAH10OSP0CZ25 163 aa13.51□□□□□ -0.25
CPSF1-209ENST00000532725 FOXA3P55318 350 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-209ENST00000532725 ZNF56Q15929 161 aa13.51□□□□□ -0.25
CPSF1-209ENST00000532725 LELP1Q5T871 98 aa13.51□□□□□ -0.25
CPSF1-209ENST00000532725 A8MWL6 223 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 F5H697 171 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 SMIM17P0DL12 118 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 BTF3P20290 206 aaKnown RBP13.5□□□□□ -0.25
CPSF1-209ENST00000532725 RAB14P61106 215 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 CT83Q5H943 113 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 OR10G8Q8NGN5 311 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 OSTCQ9NRP0 149 aa13.5□□□□□ -0.25
CPSF1-209ENST00000532725 BIRC6Q9NR09 4857 aa13.49□□□□□ -0.25
CPSF1-209ENST00000532725 TRBV7-3A0A075B6L6 115 aa13.49□□□□□ -0.25
CPSF1-209ENST00000532725 EVI2AP22794 236 aa13.49□□□□□ -0.25
CPSF1-209ENST00000532725 RPL23P62829 140 aaKnown RBP13.49□□□□□ -0.25
CPSF1-209ENST00000532725 IFITM2Q01629 132 aa13.49□□□□□ -0.25
CPSF1-209ENST00000532725 TRAV9-2A0A087WT02 112 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 TRAV8-6A0A0B4J262 113 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 IGHV3-38A0A0C4DH36 116 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 A0A1B0GVY2 172 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 K7EP13 123 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 UBE2D3P61077 147 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 UBE2D2P62837 147 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 RPL36AP83881 106 aaKnown RBP13.48□□□□□ -0.25
CPSF1-209ENST00000532725 OR10J3Q5JRS4 329 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 NEXN-AS1Q8NBZ9 246 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 RPL36ALQ969Q0 106 aaKnown RBP13.48□□□□□ -0.25
CPSF1-209ENST00000532725 ISOC2Q96AB3 205 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 NAT8Q9UHE5 227 aa13.48□□□□□ -0.25
CPSF1-209ENST00000532725 TRGC1P0CF51 173 aa13.47□□□□□ -0.25
CPSF1-209ENST00000532725 TWIST1Q15672 202 aa13.47□□□□□ -0.25
CPSF1-209ENST00000532725 LINC01556Q5JQF7 62 aa13.46□□□□□ -0.25
CPSF1-209ENST00000532725 CLLU1Q5K131 121 aa13.46□□□□□ -0.25
CPSF1-209ENST00000532725 TSKUQ8WUA8 353 aa13.46□□□□□ -0.25
CPSF1-209ENST00000532725 V9GYV3 84 aa13.46□□□□□ -0.25
CPSF1-209ENST00000532725 A0A087WWC5 75 aa13.45□□□□□ -0.26
CPSF1-209ENST00000532725 M0QY20 66 aa13.45□□□□□ -0.26
CPSF1-209ENST00000532725 PGLYRP4Q96LB8 373 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms