RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ABCA2Q9BZC7 2435 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 CRLF1O75462 422 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 ITLN2Q8WWU7 325 aaPredicted RBP10.73□□□□□ -0.69
USP48-213ENST00000529637 RAX2Q96IS3 184 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 TRBV12-3P01733 135 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 IGHV4-39P01824 125 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 SCGB1C2P0DMR2 95 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 PF4V1P10720 104 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 S100A4P26447 101 aaKnown RBP10.73□□□□□ -0.69
USP48-213ENST00000529637 ORMDL2Q53FV1 153 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 TEX29Q8N6K0 151 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 POLQO75417 2590 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 GAGE5Q13069 117 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 GAGE6Q13070 117 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 SORL1Q92673 2214 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 TSHBP01222 138 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 SBSPONQ8IVN8 264 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 CITED1Q99966 193 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 FLNCQ14315 2725 aa10.72□□□□□ -0.69
USP48-213ENST00000529637 IGLV4-69A0A075B6H9 119 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 IGHV4-4A0A075B6R2 117 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 TRAV4A0A0B4J268 109 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 EIF4EBP3O60516 100 aaPredicted RBP10.71□□□□□ -0.69
USP48-213ENST00000529637 IGHV3-30P01768 117 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 IGHV3-30-5P0DP03 117 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 UNQ9165/PRO28630Q6UXU0 137 aa10.71□□□□□ -0.69
USP48-213ENST00000529637 IGHV4-61A0A0C4DH41 118 aa10.71□□□□□ -0.7
USP48-213ENST00000529637 H7C2G1 150 aa10.71□□□□□ -0.7
USP48-213ENST00000529637 MGPP08493 103 aa10.71□□□□□ -0.7
USP48-213ENST00000529637 RBAKDNA6NC62 111 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 ZFYVE26Q68DK2 2539 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 IGHV1-69DA0A0B4J2H0 117 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 C9JAW5 83 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 H3BUX3 64 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 IGHV1-69P01742 117 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 SRD5A1P18405 259 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 C10orf126Q8N4M7 172 aa10.7□□□□□ -0.7
USP48-213ENST00000529637 CCDC179H3BU77 68 aa10.69□□□□□ -0.7
USP48-213ENST00000529637 ELANEP08246 267 aa10.69□□□□□ -0.7
USP48-213ENST00000529637 IGHV4-38-2P0DP08 117 aa10.69□□□□□ -0.7
USP48-213ENST00000529637 USP9XQ93008 2570 aaPredicted RBP10.69□□□□□ -0.7
USP48-213ENST00000529637 OR10J6PQ8NGY7 276 aa10.69□□□□□ -0.7
USP48-213ENST00000529637 SLC25A20O43772 301 aa10.69□□□□□ -0.7
USP48-213ENST00000529637 RPL39P62891 51 aaKnown RBP10.69□□□□□ -0.7
USP48-213ENST00000529637 F6UB75 175 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 PIMREGQ9BSJ6 248 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 ATP5J2P56134 94 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 C20orf173Q96LM9 149 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 CCL19Q99731 98 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 CFAP46Q8IYW2 2715 aa10.68□□□□□ -0.7
USP48-213ENST00000529637 BLCAPP62952 87 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 PRO1854Q9UHT4 67 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 CRYBG3Q68DQ2 2970 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 FAM223BA6NKX1 122 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 RNASE4P34096 147 aaKnown RBP10.67□□□□□ -0.7
USP48-213ENST00000529637 TMEM170BQ5T4T1 132 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 C9orf139Q6ZV77 190 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 FAM223AQ8IWN6 122 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 TP53TG1Q9Y2A0 90 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 MUC4Q99102 2169 aa10.67□□□□□ -0.7
USP48-213ENST00000529637 RHODO00212 210 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 GPHB5Q86YW7 130 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 SLC25A29Q8N8R3 303 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 ZNRF2Q8NHG8 242 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 GNRH2O43555 120 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 NDUFV3P56181 108 aaKnown RBP10.66□□□□□ -0.7
USP48-213ENST00000529637 SHISA2Q6UWI4 295 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 C9orf47Q6ZRZ4 202 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 PHLDA3Q9Y5J5 127 aa10.66□□□□□ -0.7
USP48-213ENST00000529637 A4D1N5 150 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 LYRM7Q5U5X0 104 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 NTN5Q8WTR8 489 aaPredicted RBP10.65□□□□□ -0.7
USP48-213ENST00000529637 AMELXQ99217 191 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 VCX2Q9H322 139 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 DPH3P1Q9H4G8 78 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 GAGE2BQ13066 116 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 GAGE2EQ4V326 116 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 GAGE2DQ9UEU5 116 aa10.65□□□□□ -0.7
USP48-213ENST00000529637 LRRK2Q5S007 2527 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 TEX49A0A1B0GTD5 131 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 TMEM262E9PQX1 116 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 JPT2Q9H910 190 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 IGHV3-64A0A075B6Q5 118 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 Q8N1Y9 231 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 MRPL53Q96EL3 112 aaKnown RBP10.64□□□□□ -0.71
USP48-213ENST00000529637 OPRPNQ99935 248 aaPredicted RBP10.64□□□□□ -0.71
USP48-213ENST00000529637 U3KQE9 123 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 DOPEY1Q5JWR5 2465 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 VPS13CQ709C8 3753 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 CELSR2Q9HCU4 2923 aa10.64□□□□□ -0.71
USP48-213ENST00000529637 IGIPA6NJ69 53 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 RHPN1-AS1Q9BWJ2 59 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 BEX4Q9NWD9 120 aaPredicted RBP10.63□□□□□ -0.71
USP48-213ENST00000529637 MYO9AB2RTY4 2548 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 UTP20O75691 2785 aaKnown RBP10.63□□□□□ -0.71
USP48-213ENST00000529637 IGHV4-30-2A0A087WSY4 118 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 TRAV21A0A0B4J279 112 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 SNCGO76070 127 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 ASIPP42127 132 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 TMEM95Q3KNT9 176 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms