RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CRIP2P52943 208 aaPredicted RBP7.34□□□□□ -1.23
VCAN-210ENST00000513960 GAGE4Q13068 117 aa7.34□□□□□ -1.23
VCAN-210ENST00000513960 C10orf126Q8N4M7 172 aa7.34□□□□□ -1.23
VCAN-210ENST00000513960 C15orf53Q8NAA6 179 aa7.34□□□□□ -1.23
VCAN-210ENST00000513960 TRAV12-1A0A0B4J245 112 aa7.34□□□□□ -1.24
VCAN-210ENST00000513960 TRAV4A0A0B4J268 109 aa7.34□□□□□ -1.24
VCAN-210ENST00000513960 IGHG4P01861 327 aa7.34□□□□□ -1.24
VCAN-210ENST00000513960 TOMM6Q96B49 74 aa7.34□□□□□ -1.24
VCAN-210ENST00000513960 NCOR2Q9Y618 2525 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 IFITM1P13164 125 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 OPRPNQ99935 248 aaPredicted RBP7.33□□□□□ -1.24
VCAN-210ENST00000513960 IGHV7-4-1A0A0J9YVY3 117 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 BUB3O43684 328 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 JPT2Q9H910 190 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 TRAV21A0A0B4J279 112 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 CFC1BP0CG36 223 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 CFC1P0CG37 223 aa7.33□□□□□ -1.24
VCAN-210ENST00000513960 J3QQQ9 107 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 PRR9Q5T870 116 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 C2orf82Q6UX34 121 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 TRAV12-3A0A0B4J271 114 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 A0A0J9YY99 117 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 NPFFO15130 113 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 PMVKQ15126 192 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 FAM159AQ6UWV7 190 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 TMEM219Q86XT9 240 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 EEF1AKMT3Q96AZ1 226 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 A0A0U1RRA0 63 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 TEX49A0A1B0GTD5 131 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 LMO4P61968 165 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 CNFNQ9BYD5 112 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 CHD8Q9HCK8 2581 aa7.32□□□□□ -1.24
VCAN-210ENST00000513960 CD7P09564 240 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 DCHS2Q6V1P9 2916 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 SORL1Q92673 2214 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 NDUFV3P56181 108 aaKnown RBP7.31□□□□□ -1.24
VCAN-210ENST00000513960 AJUBAQ96IF1 538 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 SPXQ9BT56 116 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 CENPVL3A0A0U1RRI6 287 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 CRLF1O75462 422 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 PAPPA-AS1Q5QFB9 102 aa7.31□□□□□ -1.24
VCAN-210ENST00000513960 UBE2D1P51668 147 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 ATXN8Q156A1 80 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 MUSTN1Q8IVN3 82 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 SDHAF1A6NFY7 115 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 TMEM95Q3KNT9 176 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 RNASE13Q5GAN3 156 aaKnown RBP7.3□□□□□ -1.24
VCAN-210ENST00000513960 MEIG1Q5JSS6 88 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 Q8N1Y9 231 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 ITLN2Q8WWU7 325 aaPredicted RBP7.3□□□□□ -1.24
VCAN-210ENST00000513960 LINC00477Q96M19 166 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 H3BMM0 161 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 TSPEAR-AS2P59090 65 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 UBE2WQ96B02 151 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 PIMREGQ9BSJ6 248 aa7.3□□□□□ -1.24
VCAN-210ENST00000513960 GNLYP22749 145 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 TRBV7-1A0A0A6YYK4 115 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 COX6CP09669 75 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 UBE2D3P61077 147 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 UBE2D2P62837 147 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 ZFAND3Q9H8U3 227 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 HRNRQ86YZ3 2850 aaPredicted RBP7.29□□□□□ -1.24
VCAN-210ENST00000513960 TRAV8-3A0A0A6YYJ7 113 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 IGHV3-73A0A0B4J1V6 119 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 TRBV7-9A0A0J9YWB2 115 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 COX8CQ7Z4L0 72 aa7.29□□□□□ -1.24
VCAN-210ENST00000513960 LINC01620Q4KN68 170 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 DUX3Q96PT4 197 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 C19orf84I3L1E1 186 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 SHISA2Q6UWI4 295 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 CCDC140Q96MF4 163 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 MOB4Q9Y3A3 225 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 TRAV41A0A0B4J266 112 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 IGHV3-30P01768 117 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 IGHV3-30-5P0DP03 117 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 PF4V1P10720 104 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 SRSF2Q01130 221 aaKnown RBP7.28□□□□□ -1.24
VCAN-210ENST00000513960 LY6EQ16553 131 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 C5orf56Q8N8D9 126 aa7.28□□□□□ -1.24
VCAN-210ENST00000513960 RBAKDNA6NC62 111 aa7.27□□□□□ -1.24
VCAN-210ENST00000513960 VCYO14598 125 aa7.27□□□□□ -1.24
VCAN-210ENST00000513960 C2CD3Q4AC94 2353 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 PPP1R17O96001 155 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 BRD3OSQ6XYD6 125 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 C20orf173Q96LM9 149 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 A0A0J9YXV3 536 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 ZNF575Q86XF7 245 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 SPG11Q96JI7 2443 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 SUMO4Q6EEV6 95 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 C9orf139Q6ZV77 190 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 CLEC2BQ92478 149 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 CHCHD5Q9BSY4 110 aa7.27□□□□□ -1.25
VCAN-210ENST00000513960 NACAE9PAV3 2078 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 SLC25A29Q8N8R3 303 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 PRORYQ9H606 182 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 IGHV1-69DA0A0B4J2H0 117 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 LINC01546A6NGU7 62 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 IGHV1-69P01742 117 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 TRAV12-2A0A075B6T6 113 aa7.26□□□□□ -1.25
VCAN-210ENST00000513960 CLPSL1A2RUU4 121 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms