RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ALKAL2Q6UX46 152 aa6.6□□□□□ -1.35
RNF4-221ENST00000513643 TMSB15BA0A087X1C1 80 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 IGHV3-73A0A0B4J1V6 119 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 RHODO00212 210 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 IFNA1P01562 189 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 LINC00315P59091 139 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 SYT8Q8NBV8 401 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 PCNPQ8WW12 178 aaKnown RBP6.59□□□□□ -1.35
RNF4-221ENST00000513643 PRADC1Q9BSG0 188 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 KIF25-AS1Q9Y6Z4 181 aa6.59□□□□□ -1.35
RNF4-221ENST00000513643 TMEM250H0YL14 139 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 IGLC6P0CF74 106 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 PRR27Q6MZM9 219 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 WFDC10BQ8IUB3 73 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 ZFP82Q8N141 532 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 C14orf178Q8N769 122 aaPredicted RBP6.58□□□□□ -1.36
RNF4-221ENST00000513643 OR10AG1Q8NH19 301 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 MED9Q9NWA0 146 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 PHLDA3Q9Y5J5 127 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 DNAH8Q96JB1 4490 aa6.58□□□□□ -1.36
RNF4-221ENST00000513643 RBFOX3A6NFN3 312 aa6.57□□□□□ -1.36
RNF4-221ENST00000513643 LELP1Q5T871 98 aa6.57□□□□□ -1.36
RNF4-221ENST00000513643 ATP6V0E2Q8NHE4 81 aa6.57□□□□□ -1.36
RNF4-221ENST00000513643 GTSF1LQ9H1H1 148 aa6.57□□□□□ -1.36
RNF4-221ENST00000513643 PCLOQ9Y6V0 5065 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 A0A087WWL8 130 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 TRBV10-1A0A0K0K1A3 114 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 K7EN84 100 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 M0R381 172 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 GNG4P50150 75 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 LINC01556Q5JQF7 62 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 OR10G8Q8NGN5 311 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 OCC1Q8TAD7 63 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 KRTAP3-3Q9BYR6 98 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 KRTAP3-2Q9BYR7 98 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 LY96Q9Y6Y9 160 aa6.56□□□□□ -1.36
RNF4-221ENST00000513643 IGHV3-38A0A0C4DH36 116 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 RPS20P60866 119 aaKnown RBP6.55□□□□□ -1.36
RNF4-221ENST00000513643 RAB4BP61018 213 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 WDR73Q6P4I2 378 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 NUDT10Q8NFP7 164 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 NUDT11Q96G61 164 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 FAM210AQ96ND0 272 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 CNFNQ9BYD5 112 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 BIN3Q9NQY0 253 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 TNFRSF18Q9Y5U5 241 aa6.55□□□□□ -1.36
RNF4-221ENST00000513643 TRAV9-2A0A087WT02 112 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GAGE12JA6NER3 117 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GZMBP10144 247 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 UBE2D3P61077 147 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 UBE2D2P62837 147 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GAGE1Q13065 139 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GAGE4Q13068 117 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GAGE5Q13069 117 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 GAGE13Q4V321 117 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 OR2D3Q8NGH3 330 aa6.54□□□□□ -1.36
RNF4-221ENST00000513643 FAT1Q14517 4588 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 ABCA13Q86UQ4 5058 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 IBA57-AS1B1ANH7 110 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 F2Z2F3 143 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 P01737 135 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 EVI2AP22794 236 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 FOXA3P55318 350 aaPredicted RBP6.53□□□□□ -1.36
RNF4-221ENST00000513643 FAM74A4Q5TZK3 123 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 TEX261Q6UWH6 196 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 FAM231DQ6ZW35 169 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 C10orf126Q8N4M7 172 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 FER1L6-AS1Q8NA97 138 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 DAZAP1Q96EP5 407 aaKnown RBP6.53□□□□□ -1.36
RNF4-221ENST00000513643 MSRB1Q9NZV6 116 aa6.53□□□□□ -1.36
RNF4-221ENST00000513643 TRBV7-3A0A075B6L6 115 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 A0A087WWC5 75 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 TRAV8-6A0A0B4J262 113 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 MUC21A0A0G2JKD1 596 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 MUC21A0A140T8X8 626 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 SRP19P09132 144 aaKnown RBP6.52□□□□□ -1.37
RNF4-221ENST00000513643 CTRLP40313 264 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 CACNG7P62955 275 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 SPANXN1Q5VSR9 72 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 NFE4Q86UQ8 179 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 NEXN-AS1Q8NBZ9 246 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 GTSF1Q8WW33 167 aa6.52□□□□□ -1.37
RNF4-221ENST00000513643 RNASE7Q9H1E1 156 aaKnown RBP6.52□□□□□ -1.37
RNF4-221ENST00000513643 XKRY2A2RUG3 117 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 C9JQL5 133 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 M0QY20 66 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 KRTAP10-2P60368 255 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 TOR2AQ5JU69 321 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 LYZL1Q6UWQ5 148 aa6.51□□□□□ -1.37
RNF4-221ENST00000513643 RPP21Q9H633 154 aaKnown RBP6.51□□□□□ -1.37
RNF4-221ENST00000513643 LRCOL1A6NCL2 159 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 NTF3P20783 257 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 RPL36AP83881 106 aaKnown RBP6.5□□□□□ -1.37
RNF4-221ENST00000513643 LAGE3Q14657 143 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 CT83Q5H943 113 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 OR10J3Q5JRS4 329 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 LINC01551Q86U37 167 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 NIT1Q86X76 327 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 Q8N3U1 123 aa6.5□□□□□ -1.37
RNF4-221ENST00000513643 RPL36ALQ969Q0 106 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms