RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PTPRZ1P23471 2315 aaPredicted RBP2.73□□□□□ -1.97
USP53-205ENST00000509769 ANKRD36A6QL64 1941 aa2.73□□□□□ -1.97
USP53-205ENST00000509769 FOCADQ5VW36 1801 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 LINC00473A8K010 186 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 C5orf24Q7Z6I8 188 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 PATE1Q8WXA2 126 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 TTC3P53804 2025 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 IGKV1-8A0A0C4DH67 115 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 RFPL3SP0C7P2 107 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 CCL18P55774 89 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 HILS1P60008 231 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 Q6ZQY7 126 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 MDS2Q8NDY4 140 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 IGLV3-1P01715 115 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 PRB4P10163 310 aaPredicted RBP2.72□□□□□ -1.97
USP53-205ENST00000509769 C6orf99Q4VX62 202 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 SPINK14Q6IE38 97 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 C20orf204Q6ZNR8 217 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 SLC22A18ASQ8N1D0 253 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 ZNF491Q8N8L2 437 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 LEAP2Q969E1 77 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 C11orf1Q9H5F2 150 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 EVPLQ92817 2033 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 IGHV3-66A0A0C4DH42 116 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 IGHV5-10-1A0A0J9YXX1 117 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 CYSRT1A8MQ03 144 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 DEFB114Q30KQ6 69 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 VMO1Q7Z5L0 202 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 ZFAND3Q9H8U3 227 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 NCOR1O75376 2440 aa2.72□□□□□ -1.97
USP53-205ENST00000509769 RPL37AP8A6NKH3 93 aa2.71□□□□□ -1.97
USP53-205ENST00000509769 ASB16-AS1Q495Z4 193 aa2.71□□□□□ -1.97
USP53-205ENST00000509769 NTM-AS1Q6ZSK4 140 aa2.71□□□□□ -1.97
USP53-205ENST00000509769 RNASE6Q93091 150 aaKnown RBP2.71□□□□□ -1.97
USP53-205ENST00000509769 CDIP1Q9H305 208 aa2.71□□□□□ -1.97
USP53-205ENST00000509769 CCDC88CQ9P219 2028 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 IGHV4-4A0A075B6R2 117 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 TRBV6-8A0A0A6YYG3 113 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 M0R378 163 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 HRKO00198 91 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 IGHV3-48P01763 117 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 DEFB121Q5J5C9 76 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 KLHL30-AS1Q8NEE0 82 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 C1orf147Q96MC9 270 aaPredicted RBP2.71□□□□□ -1.98
USP53-205ENST00000509769 TRIP11Q15643 1979 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 H0Y8X5 98 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 ACYP2P14621 99 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 ZNF22P17026 224 aaPredicted RBP2.71□□□□□ -1.98
USP53-205ENST00000509769 KAAG1Q9UBP8 84 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 GPR179Q6PRD1 2367 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 IGKV1-27A0A075B6S5 117 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 IGHV3-23P01764 117 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 NDPQ00604 133 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 GGNQ86UU5 652 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 NINQ8N4C6 2090 aa2.71□□□□□ -1.98
USP53-205ENST00000509769 IGKV1-39P01597 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 ANGP03950 147 aaKnown RBP2.7□□□□□ -1.98
USP53-205ENST00000509769 IGKV1D-39P04432 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 SOSTDC1Q6X4U4 206 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV4OR15-8A0A075B7B6 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 A0A087WW49 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 C4orf51C9J302 202 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV1-2P23083 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGFBP6P24592 240 aaPredicted RBP2.7□□□□□ -1.98
USP53-205ENST00000509769 NPBQ8NG41 125 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 FAM168AQ92567 244 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 MTCL1Q9Y4B5 1905 aaKnown RBP2.7□□□□□ -1.98
USP53-205ENST00000509769 IGKV2D-26A0A0A0MRZ7 120 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGKV1D-43A0A0B4J1Z2 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 A0A1B0GU69 56 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 PATE3B3GLJ2 98 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV1-46P01743 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 LYPD6Q86Y78 171 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 FAM167A-AS1Q96KT0 104 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 RPP25Q9BUL9 199 aaKnown RBP2.7□□□□□ -1.98
USP53-205ENST00000509769 PARP14Q460N5 1801 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 SHROOM3Q8TF72 1996 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV3OR16-13A0A075B7E8 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV3-74A0A0B4J1X5 117 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 C15orf65H3BRN8 121 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 UQCR11O14957 56 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 C1orf158Q8N1D5 194 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 PLA2G2FQ9BZM2 168 aa2.7□□□□□ -1.98
USP53-205ENST00000509769 IGHV3-49A0A0A0MS15 119 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 K7EIM0 57 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 C9orf116Q5BN46 136 aaPredicted RBP2.69□□□□□ -1.98
USP53-205ENST00000509769 PIP4P2Q8N4L2 257 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 DEFB105AQ8NG35 78 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 CCL19Q99731 98 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 CNFNQ9BYD5 112 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 Q9HAA7 133 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 IGHV1-18A0A0C4DH31 117 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 IGKV1-6A0A0C4DH72 117 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 CRIP2P52943 208 aaPredicted RBP2.69□□□□□ -1.98
USP53-205ENST00000509769 LY6EQ16553 131 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 Q8N3U1 123 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 ZNF702PQ9H963 129 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 CHD5Q8TDI0 1954 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 IGHV3-73A0A0B4J1V6 119 aa2.69□□□□□ -1.98
USP53-205ENST00000509769 IGHV4-28A0A0C4DH34 117 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms