RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TRBV20OR9-2A0A075B6H5 130 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TRBV25-1A0A075B6N4 114 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TRAV8-3A0A0A6YYJ7 113 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TRAV41A0A0B4J266 112 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 IGHV3OR16-9A0A0B4J2B5 98 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CTXND1A0A1B0GTU2 59 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SMIM27A0A1W2PRY6 76 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 IBA57-AS1B1ANH7 110 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C11orf94C9JXX5 98 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 INS-IGF2F8WCM5 200 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 H3BMM0 161 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 J3QLW9 94 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 FFAR1O14842 300 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 ZNF73O43830 326 aaPredicted RBP1.13□□□□□ -2.23
NUP54-208ENST00000508604 TIMM17BO60830 172 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CHTF8P0CG12 524 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CD70P32970 193 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 UBE2D1P51668 147 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SYNJ2BPP57105 145 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SUPT4H1P63272 117 aaKnown RBP1.13□□□□□ -2.23
NUP54-208ENST00000508604 REG3AQ06141 175 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 KIAA0087Q14695 138 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 ZNF56Q15929 161 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C1orf100Q5SVJ3 147 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C11orf71Q6IPW1 123 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 NDUFA11Q86Y39 141 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A29Q8N8R3 303 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 DCANP1Q8TF63 244 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 UBE2WQ96B02 151 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TIMM17AQ99595 171 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CCL13Q99616 98 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TMEM243Q9BU79 118 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C11orf1Q9H5F2 150 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C2orf16Q68DN1 1984 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 NCOA6Q14686 2063 aaPredicted RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 DOCK11Q5JSL3 2073 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 BRWD3Q6RI45 1802 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 RP1L1Q8IWN7 2480 aaPredicted RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 SCN3AQ9NY46 2000 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 EML6Q6ZMW3 1958 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 GREB1Q4ZG55 1949 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 TRAV3A0A0B4J244 114 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 A0A0B4J2C4 111 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 TRBV10-2A0A0K0K1G8 114 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 A0A1B0GWA3 101 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 CRYM-AS1A6NIL9 109 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 A8MUN3 132 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 H7BZZ5 65 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 TMEM256-PLSCR3K7ERE1 68 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 M0R381 172 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 LST1O00453 97 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 PSPHP1O15172 72 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 PIN1P1O15428 100 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 FSTL3O95633 263 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 CCKP06307 115 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 IFI6P09912 130 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A16P16260 332 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 CKS2P33552 79 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 MP68P56378 58 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 FXYD6P3P58550 94 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 UBE2BP63146 152 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 ZNF816Q0VGE8 651 aaPredicted RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 KLKP1Q107X0 134 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 SLC48A1Q6P1K1 146 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 CEMP1Q6PRD7 247 aaPredicted RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 LINC00596Q86U02 117 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 RPRMLQ8N4K4 120 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 Q8N8P6 123 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 LINC00304Q8N9R0 145 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 SPTSSAQ969W0 71 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 SLC50A1Q9BRV3 221 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A22Q9H936 323 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 TAS2R4Q9NYW5 299 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 MRPL35Q9NZE8 188 aaKnown RBP1.12□□□□□ -2.23
NUP54-208ENST00000508604 TP73-AS1Q9UF72 201 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 LINC00588Q9Y4M8 146 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 V9GYV3 84 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 THSD7AQ9UPZ6 1657 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 COL18A1P39060 1754 aa1.12□□□□□ -2.23
NUP54-208ENST00000508604 PTPRSQ13332 1948 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 MGAMO43451 1857 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 PLXNA2O75051 1894 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 UBR3Q6ZT12 1888 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 COL11A1P12107 1806 aaPredicted RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 TRBV7-3A0A075B6L6 115 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 IGLV1-36A0A0B4J1U3 117 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 TRAV13-2A0A0B4J235 113 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 LOC107984156A0A0G2JMH3 177 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 LOC389332A0A1B0GUA5 103 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 A0A1W2PQD3 144 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 RBMY1BA6NDE4 496 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 RBMY1EA6NEQ0 496 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 C4orf51C9J302 202 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 E7EQL1 145 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 H3BVH4 76 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 K7ERJ3 54 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 PEX7O00628 323 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 COX7A2LO14548 114 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 RBMY1DP0C7P1 496 aaKnown RBP1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms