RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 TRAV12-3A0A0B4J271 114 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 LOC105371267A0A1B0GV96 52 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 C20orf197Q8N268 126 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 MMGT1Q8N4V1 131 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 PRR15LQ9BU68 103 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 BATF3Q9NR55 127 aa0.06□□□□□ -2.4
LSM6-205ENST00000507449 CACNA1HO95180 2353 aa0.05□□□□□ -2.4
LSM6-205ENST00000507449 ZNF142P52746 1687 aaPredicted RBP0.05□□□□□ -2.4
LSM6-205ENST00000507449 RBAKDNA6NC62 111 aa0.05□□□□□ -2.4
LSM6-205ENST00000507449 F2Z2F3 143 aa0.05□□□□□ -2.4
LSM6-205ENST00000507449 SSBP1Q04837 148 aaKnown RBP0.05□□□□□ -2.4
LSM6-205ENST00000507449 SPCS2Q15005 226 aa0.05□□□□□ -2.4
LSM6-205ENST00000507449 BPESC1Q9GZL8 116 aa0.05□□□□□ -2.4
LSM6-205ENST00000507449 DISP2A7MBM2 1401 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 PRG4Q92954 1404 aaPredicted RBP0.04□□□□□ -2.4
LSM6-205ENST00000507449 ABCA12Q86UK0 2595 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 TNS1Q9HBL0 1735 aaKnown RBP0.04□□□□□ -2.4
LSM6-205ENST00000507449 SSPOA2VEC9 5147 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 VIRMAQ69YN4 1812 aaKnown RBP0.04□□□□□ -2.4
LSM6-205ENST00000507449 CDK13Q14004 1512 aaKnown RBP0.04□□□□□ -2.4
LSM6-205ENST00000507449 SSC5DA1L4H1 1573 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 C4orf33Q8N1A6 199 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 VSTM2AQ8TAG5 236 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 COX7B2Q8TF08 81 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 SAR1AQ9NR31 198 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 ZFYVE26Q68DK2 2539 aa0.04□□□□□ -2.4
LSM6-205ENST00000507449 PIRTP0C851 137 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 COX4I1P13073 169 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 ALX1Q15699 326 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 CTAGE3PQ8IX95 158 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 POLQO75417 2590 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 MED13LQ71F56 2210 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 KIF13AQ9H1H9 1805 aa0.03□□□□□ -2.4
LSM6-205ENST00000507449 DSTQ03001 7570 aaKnown RBP0.02□□□□□ -2.41
LSM6-205ENST00000507449 SMIM11BQ8TCY0 68 aa0.02□□□□□ -2.41
LSM6-205ENST00000507449 HRNRQ86YZ3 2850 aaPredicted RBP0.02□□□□□ -2.41
LSM6-205ENST00000507449 ADGRB1O14514 1584 aa0.02□□□□□ -2.41
LSM6-205ENST00000507449 CELSR2Q9HCU4 2923 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 TRBV7-1A0A0A6YYK4 115 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 M0R2Z0 102 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 NCR2O95944 276 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 NMBP08949 121 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 SLC48A1Q6P1K1 146 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 Q6ZUT4 128 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 C10orf82Q8WW14 230 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 F5P12259 2224 aa0.01□□□□□ -2.41
LSM6-205ENST00000507449 CLPSL1A2RUU4 121 aa0□□□□□ -2.41
LSM6-205ENST00000507449 MUC22E2RYF6 1773 aaPredicted RBP0□□□□□ -2.41
LSM6-205ENST00000507449 Q5BKY6 102 aa0□□□□□ -2.41
LSM6-205ENST00000507449 C9orf116Q5BN46 136 aaPredicted RBP0□□□□□ -2.41
LSM6-205ENST00000507449 SPANXN1Q5VSR9 72 aa0□□□□□ -2.41
LSM6-205ENST00000507449 LZICQ8WZA0 190 aa0□□□□□ -2.41
LSM6-205ENST00000507449 SPRR2GQ9BYE4 73 aa0□□□□□ -2.41
LSM6-205ENST00000507449 V9GYV3 84 aa0□□□□□ -2.41
LSM6-205ENST00000507449 CDK5RAP2Q96SN8 1893 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 CELSR1Q9NYQ6 3014 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 TRGV1A0A0A0MS02 117 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 J3QR89 54 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 NPFFO15130 113 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 SMIM21Q3B7S5 101 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 FAM74A4Q5TZK3 123 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 TSTD1Q8NFU3 115 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 MAFIPQ8WZ33 124 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 ANP32BQ92688 251 aaKnown RBP-0.01□□□□□ -2.41
LSM6-205ENST00000507449 TMEM242Q9NWH2 141 aa-0.01□□□□□ -2.41
LSM6-205ENST00000507449 LAMC3Q9Y6N6 1575 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 FHAD1B1AJZ9 1412 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 K7ERU9 68 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 ACYP2P14621 99 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 UBE2D1P51668 147 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 UBE2G1P62253 170 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 Q6ZRX8 168 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 PLXNA1Q9UIW2 1896 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 MUC12Q9UKN1 5478 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 CEP152O94986 1710 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 UNC13AQ9UPW8 1703 aa-0.02□□□□□ -2.41
LSM6-205ENST00000507449 IBTKQ9P2D0 1353 aaPredicted RBP-0.03□□□□□ -2.41
LSM6-205ENST00000507449 SPINK1P00995 79 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 APODP05090 189 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 EDDM3BP56851 147 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 COX6A2Q02221 97 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 COPZ2Q9P299 210 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 COL7A1Q02388 2944 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 UNC13BO14795 1591 aa-0.03□□□□□ -2.41
LSM6-205ENST00000507449 PHIPQ8WWQ0 1821 aa-0.03□□□□□ -2.42
LSM6-205ENST00000507449 CHD9Q3L8U1 2897 aa-0.04□□□□□ -2.42
LSM6-205ENST00000507449 NRXN2Q9P2S2 1712 aa-0.04□□□□□ -2.42
LSM6-205ENST00000507449 TMEM2Q9UHN6 1383 aa-0.04□□□□□ -2.42
LSM6-205ENST00000507449 SDF2Q99470 211 aa-0.04□□□□□ -2.42
LSM6-205ENST00000507449 PSMG3Q9BT73 122 aaPredicted RBP-0.04□□□□□ -2.42
LSM6-205ENST00000507449 RPRMQ9NS64 109 aa-0.04□□□□□ -2.42
LSM6-205ENST00000507449 TMEM14DPA8MWL7 114 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 IL5P05113 134 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 RPS25P62851 125 aaKnown RBP-0.05□□□□□ -2.42
LSM6-205ENST00000507449 INSL4Q14641 139 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 LAMB1P07942 1786 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 MYH13Q9UKX3 1938 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 IGSF10Q6WRI0 2623 aa-0.05□□□□□ -2.42
LSM6-205ENST00000507449 IGF2RP11717 2491 aa-0.06□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms