RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 RGPD3A6NKT7 1758 aaPredicted RBP4.56□□□□□ -1.68
USF3-204ENST00000496826 DOCK2Q92608 1830 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 LOXP28300 417 aaPredicted RBP4.56□□□□□ -1.68
USF3-204ENST00000496826 TMEM200BQ69YZ2 307 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 Q9BRP9 147 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 CCL26Q9Y258 94 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 C5orf67F2Z3F1 127 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 PDCD11Q14690 1871 aaKnown RBP4.55□□□□□ -1.68
USF3-204ENST00000496826 DOPEY1Q5JWR5 2465 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 LAMB2P55268 1798 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 RBBP6Q7Z6E9 1792 aaKnown RBP4.55□□□□□ -1.68
USF3-204ENST00000496826 CENPVL1A0A0U1RR11 272 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 C11orf86A6NJI1 115 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 Q96MF0 132 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 MED13LQ71F56 2210 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 FER1L4A9Z1Z3 1794 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 IGHV4-61A0A0C4DH41 118 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 PIK3CD-AS1Q5SR53 167 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 Q6ZS49 121 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 LINC00269Q8N2A0 174 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 LEAP2Q969E1 77 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 IGLC7A0M8Q6 106 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 Q6ZQT7 251 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 IGHV4-30-2A0A087WSY4 118 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 C19orf71A6NCJ1 209 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 E7EUB6 86 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 COL14A1Q05707 1796 aaKnown RBP4.55□□□□□ -1.68
USF3-204ENST00000496826 EXPH5Q8NEV8 1989 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 M0R378 163 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 WISP1O95388 367 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 LAMA4Q16363 1823 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 EIF4EBP1Q13541 118 aaPredicted RBP4.55□□□□□ -1.68
USF3-204ENST00000496826 TMEM131LA2VDJ0 1609 aa4.55□□□□□ -1.68
USF3-204ENST00000496826 PRR31Q5SQ13 230 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TNFRSF12AQ9NP84 129 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 ESRGQ1W209 222 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TOMM6Q96B49 74 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 HCSTQ9UBK5 93 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 FLG2Q5D862 2391 aaPredicted RBP4.54□□□□□ -1.68
USF3-204ENST00000496826 SAA4P35542 130 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 CLPSL2Q6UWE3 100 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 C18orf32Q8TCD1 76 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 SRRM5B3KS81 715 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 LHFPL1Q86WI0 220 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 S4R3C0 116 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TIAM2Q8IVF5 1701 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 IGHV3-16A0A0C4DH30 117 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 IGLV2-23P01705 113 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 SPINK6Q6UWN8 80 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TREML4Q6UXN2 200 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TECTAO75443 2155 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TOPAZ1Q8N9V7 1692 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 PAPPAQ13219 1627 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 TRBV6-6A0A0A6YYG2 114 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 C1orf158Q8N1D5 194 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 KLHDC9Q8NEP7 349 aa4.54□□□□□ -1.68
USF3-204ENST00000496826 IGHV1-18A0A0C4DH31 117 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 TRBV6-1A0A0K0K1D8 114 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 H0YJW9 148 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 PIK3C2BO00750 1634 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 LHFPL6Q9Y693 200 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 CICQ96RK0 1608 aaPredicted RBP4.53□□□□□ -1.68
USF3-204ENST00000496826 IGLV3-9A0A075B6K5 115 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 IGHV3-33P01772 117 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 IGHV3-30-3P0DP02 117 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 PRR13Q9NZ81 148 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 PLXND1Q9Y4D7 1925 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 IGKV1D-17A0A075B6S4 117 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 TFF2Q03403 129 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 CD164L2Q6UWJ8 174 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 ZNF747Q9BV97 191 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 PRR25Q96S07 402 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 TRPM7Q96QT4 1865 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 C7orf65Q6ZTY9 151 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 PRORYQ9H606 182 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 HIVEP3Q5T1R4 2406 aa4.53□□□□□ -1.68
USF3-204ENST00000496826 TNRC6BQ9UPQ9 1833 aaKnown RBP4.52□□□□□ -1.69
USF3-204ENST00000496826 FRMD6-AS1P0C7T7 363 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 NHLRC4P0CG21 123 aaPredicted RBP4.52□□□□□ -1.69
USF3-204ENST00000496826 LAMB4A4D0S4 1761 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 MALRD1Q5VYJ5 2156 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 LY6LH3BQJ8 138 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 K7EMT4 169 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 IGLV4-69A0A075B6H9 119 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 COX7CP15954 63 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 MRGPRG-AS1Q2M3A8 158 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 SHISA2Q6UWI4 295 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 RPL37AP8A6NKH3 93 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 COLCA2A8K830 154 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 RNF223E7ERA6 249 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 TMEM105Q8N8V8 129 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 DEPDC5O75140 1603 aa4.52□□□□□ -1.69
USF3-204ENST00000496826 PHLPP1O60346 1717 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 DDX60Q8IY21 1712 aaKnown RBP4.51□□□□□ -1.69
USF3-204ENST00000496826 IGKV1-27A0A075B6S5 117 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 PLXNB2O15031 1838 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 NDPQ00604 133 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 Q6Q795 121 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 ADAMTS7Q9UKP4 1686 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 IGHV3OR16-8A0A075B7F1 116 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms