RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PHLDA3Q9Y5J5 127 aa13.02□□□□□ -0.33
USP40-217ENST00000496298 GAGE12JA6NER3 117 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 CXCL1P09341 107 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 GAGE1Q13065 139 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 GAGE4Q13068 117 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 GAGE5Q13069 117 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 GAGE13Q4V321 117 aa13.01□□□□□ -0.33
USP40-217ENST00000496298 TMSB15BA0A087X1C1 80 aa13□□□□□ -0.33
USP40-217ENST00000496298 BAGE2Q86Y30 109 aa13□□□□□ -0.33
USP40-217ENST00000496298 ZFP82Q8N141 532 aa13□□□□□ -0.33
USP40-217ENST00000496298 Q8N1X5 172 aa13□□□□□ -0.33
USP40-217ENST00000496298 LRCOL1A6NCL2 159 aa12.99□□□□□ -0.33
USP40-217ENST00000496298 RAB5CP51148 216 aa12.99□□□□□ -0.33
USP40-217ENST00000496298 CCL20P78556 96 aa12.99□□□□□ -0.33
USP40-217ENST00000496298 LAGE3Q14657 143 aa12.99□□□□□ -0.33
USP40-217ENST00000496298 A0A087WWC5 75 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 M0R381 172 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 IGHV3-30P01768 117 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 IGHV3-33P01772 117 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 IGHV3-30-3P0DP02 117 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 IGHV3-30-5P0DP03 117 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 FUSP35637 526 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP40-217ENST00000496298 FAM74A4Q5TZK3 123 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 TCTE3Q8IZS6 198 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 C11orf52Q96A22 123 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 SSBP4Q9BWG4 385 aaPredicted RBP12.98□□□□□ -0.33
USP40-217ENST00000496298 MANBALQ9NQG1 85 aa12.98□□□□□ -0.33
USP40-217ENST00000496298 A0A087WWL8 130 aa12.97□□□□□ -0.33
USP40-217ENST00000496298 EIF5AL1Q6IS14 154 aaKnown RBP12.97□□□□□ -0.33
USP40-217ENST00000496298 TRBV10-1A0A0K0K1A3 114 aa12.96□□□□□ -0.33
USP40-217ENST00000496298 SNAI2O43623 268 aa12.96□□□□□ -0.33
USP40-217ENST00000496298 RPL19P84098 196 aaKnown RBP12.96□□□□□ -0.33
USP40-217ENST00000496298 RPL35P42766 123 aaKnown RBP12.95□□□□□ -0.34
USP40-217ENST00000496298 SULT1A2P50226 295 aa12.95□□□□□ -0.34
USP40-217ENST00000496298 GNG13Q9P2W3 67 aa12.95□□□□□ -0.34
USP40-217ENST00000496298 PSCAO43653 123 aa12.94□□□□□ -0.34
USP40-217ENST00000496298 OR5AL1P0C617 328 aa12.94□□□□□ -0.34
USP40-217ENST00000496298 Q8N3U1 123 aa12.94□□□□□ -0.34
USP40-217ENST00000496298 OR10AG1Q8NH19 301 aa12.94□□□□□ -0.34
USP40-217ENST00000496298 Q9HAA7 133 aa12.94□□□□□ -0.34
USP40-217ENST00000496298 KRTAP10-1P60331 282 aa12.93□□□□□ -0.34
USP40-217ENST00000496298 OR10G8Q8NGN5 311 aa12.93□□□□□ -0.34
USP40-217ENST00000496298 DERL1Q9BUN8 251 aa12.93□□□□□ -0.34
USP40-217ENST00000496298 TEX46H3BTG2 121 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 C1QBP02746 253 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 XGP55808 180 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 RAB4BP61018 213 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 UBE2D3P61077 147 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 UBE2D2P62837 147 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 PRR27Q6MZM9 219 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 Q6ZNX1 250 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 NTN5Q8WTR8 489 aaPredicted RBP12.92□□□□□ -0.34
USP40-217ENST00000496298 TM2D2Q9BX73 214 aa12.92□□□□□ -0.34
USP40-217ENST00000496298 TRBV7-3A0A075B6L6 115 aa12.91□□□□□ -0.34
USP40-217ENST00000496298 TRAV8-3A0A0A6YYJ7 113 aa12.91□□□□□ -0.34
USP40-217ENST00000496298 IGLV2-8P01709 118 aa12.91□□□□□ -0.34
USP40-217ENST00000496298 GCSHP23434 173 aa12.91□□□□□ -0.34
USP40-217ENST00000496298 RPL36AP83881 106 aaKnown RBP12.91□□□□□ -0.34
USP40-217ENST00000496298 DAZ4Q86SG3 579 aaKnown RBP12.91□□□□□ -0.34
USP40-217ENST00000496298 SLC51BQ86UW2 128 aa12.91□□□□□ -0.34
USP40-217ENST00000496298 RPL36ALQ969Q0 106 aaKnown RBP12.91□□□□□ -0.34
USP40-217ENST00000496298 DAZ3Q9NR90 486 aaKnown RBP12.91□□□□□ -0.34
USP40-217ENST00000496298 TOR2AQ5JU69 321 aa12.9□□□□□ -0.34
USP40-217ENST00000496298 NIT1Q86X76 327 aa12.9□□□□□ -0.34
USP40-217ENST00000496298 Q8N814 137 aa12.9□□□□□ -0.34
USP40-217ENST00000496298 MEF2BQ02080 365 aaPredicted RBP12.89□□□□□ -0.35
USP40-217ENST00000496298 CENPWQ5EE01 88 aa12.89□□□□□ -0.35
USP40-217ENST00000496298 SMIM12Q96EX1 92 aa12.89□□□□□ -0.35
USP40-217ENST00000496298 KIF25-AS1Q9Y6Z4 181 aa12.89□□□□□ -0.35
USP40-217ENST00000496298 C19orf71A6NCJ1 209 aa12.88□□□□□ -0.35
USP40-217ENST00000496298 PDE6DO43924 150 aa12.88□□□□□ -0.35
USP40-217ENST00000496298 SPANXN1Q5VSR9 72 aa12.88□□□□□ -0.35
USP40-217ENST00000496298 CHCHD7Q9BUK0 85 aa12.88□□□□□ -0.35
USP40-217ENST00000496298 NEXN-AS1Q8NBZ9 246 aa12.87□□□□□ -0.35
USP40-217ENST00000496298 IGLV5-52A0A0A0MRZ9 124 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 MUC21A0A0G2JKD1 596 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 MUC21A0A140T8X8 626 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 RAB19A4D1S5 217 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 IFNA1P01562 189 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 IGLC6P0CF74 106 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 URGCP-MRPS24S4R325 110 aa12.86□□□□□ -0.35
USP40-217ENST00000496298 TRBV20OR9-2A0A075B6H5 130 aa12.85□□□□□ -0.35
USP40-217ENST00000496298 BCL2P10415 239 aa12.85□□□□□ -0.35
USP40-217ENST00000496298 GNG4P50150 75 aa12.85□□□□□ -0.35
USP40-217ENST00000496298 RPS20P60866 119 aaKnown RBP12.85□□□□□ -0.35
USP40-217ENST00000496298 ZNF56Q15929 161 aa12.85□□□□□ -0.35
USP40-217ENST00000496298 COX11Q9Y6N1 276 aa12.85□□□□□ -0.35
USP40-217ENST00000496298 TRBV6-8A0A0A6YYG3 113 aa12.84□□□□□ -0.35
USP40-217ENST00000496298 TAGLN2P37802 199 aaKnown RBP12.84□□□□□ -0.35
USP40-217ENST00000496298 WFDC2Q14508 124 aa12.84□□□□□ -0.35
USP40-217ENST00000496298 DAZAP1Q96EP5 407 aaKnown RBP12.84□□□□□ -0.35
USP40-217ENST00000496298 TMEM70Q9BUB7 260 aa12.84□□□□□ -0.35
USP40-217ENST00000496298 MED9Q9NWA0 146 aa12.84□□□□□ -0.35
USP40-217ENST00000496298 VAX2Q9UIW0 290 aa12.84□□□□□ -0.35
USP40-217ENST00000496298 ELOBQ15370 118 aa12.83□□□□□ -0.36
USP40-217ENST00000496298 C9orf62Q8N4C0 152 aa12.83□□□□□ -0.36
USP40-217ENST00000496298 OR2D3Q8NGH3 330 aa12.83□□□□□ -0.36
USP40-217ENST00000496298 AP1S3Q96PC3 154 aa12.83□□□□□ -0.36
USP40-217ENST00000496298 DNAH8Q96JB1 4490 aa12.82□□□□□ -0.36
USP40-217ENST00000496298 A0A087WX48 190 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms