RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 NTN5Q8WTR8 489 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-230ENST00000495090 RAX2Q96IS3 184 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 FAM110AQ9BQ89 295 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 SIRPDQ9H106 197 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 SMG1Q96Q15 3661 aaKnown RBP7.26□□□□□ -1.25
SYNE1-230ENST00000495090 TRAV8-4A0A0B4J246 113 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 FAM240AA0A1B0GVK7 77 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 M0R2P5 195 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 RPL39P62891 51 aaKnown RBP7.26□□□□□ -1.25
SYNE1-230ENST00000495090 FBXL19-AS1Q494R0 122 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 Q8NA96 180 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 ODF3Q96PU9 254 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 MDFICQ9P1T7 246 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 KALRNO60229 2985 aa7.26□□□□□ -1.25
SYNE1-230ENST00000495090 H3BT86 120 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 NDUFA4O00483 81 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 GNRH2O43555 120 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 RNASE4P34096 147 aaKnown RBP7.25□□□□□ -1.25
SYNE1-230ENST00000495090 ARL3P36405 182 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 UBE2E1P51965 193 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 C19orf54Q5BKX5 351 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 KLLNB2CW77 178 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 G3V318 75 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 H3BMM0 161 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 SPRY2O43597 315 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 CRLF1O75462 422 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 MUSTN1Q8IVN3 82 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 UBE2WQ96B02 151 aa7.25□□□□□ -1.25
SYNE1-230ENST00000495090 ZNF318Q5VUA4 2279 aa7.24□□□□□ -1.25
SYNE1-230ENST00000495090 TRAV2A0A0B4J234 112 aa7.24□□□□□ -1.25
SYNE1-230ENST00000495090 ZNF22P17026 224 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-230ENST00000495090 BRI3O95415 125 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 DEFB121Q5J5C9 76 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 C11orf71Q6IPW1 123 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 C5orf56Q8N8D9 126 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 C15orf53Q8NAA6 179 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 LINC01560Q8TB33 94 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 MUC3AQ02505 3323 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 CCDC179H3BU77 68 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 TRIAP1O43715 76 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 TCF15Q12870 199 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 Q1RN00 199 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 FAM159AQ6UWV7 190 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 SPANXDQ9BXN6 97 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 SPANXCQ9NY87 97 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 DCHS1Q96JQ0 3298 aa7.23□□□□□ -1.25
SYNE1-230ENST00000495090 DMXL2Q8TDJ6 3036 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 RP1L1Q8IWN7 2480 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-230ENST00000495090 A0A0J9YXY3 114 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 TEX49A0A1B0GTD5 131 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 LY6HO94772 140 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 ELANEP08246 267 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 TNFRSF18Q9Y5U5 241 aa7.22□□□□□ -1.25
SYNE1-230ENST00000495090 TRAV41A0A0B4J266 112 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 TRBV7-7A0A0K0K1E9 115 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 COX6CP09669 75 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 ZFP36P26651 326 aaKnown RBP7.21□□□□□ -1.25
SYNE1-230ENST00000495090 C2orf82Q6UX34 121 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 C20orf203Q8NBC4 194 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 C9orf85Q96MD7 179 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 LITAFQ99732 161 aa7.21□□□□□ -1.25
SYNE1-230ENST00000495090 F5H697 171 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 H3BUA1 57 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 H7C2G1 150 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 M0QY20 66 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 IGHV4-39P01824 125 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 SAA4P35542 130 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 UNQ9165/PRO28630Q6UXU0 137 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 MUC4Q99102 2169 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 ICOSQ9Y6W8 199 aa7.21□□□□□ -1.26
SYNE1-230ENST00000495090 H7C423 109 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 DEFB123Q8N688 67 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 MOB4Q9Y3A3 225 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 PYGO1Q9Y3Y4 419 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 ARHGAP32A7KAX9 2087 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 WNK2Q9Y3S1 2297 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 BOD1L1Q8NFC6 3051 aa7.2□□□□□ -1.26
SYNE1-230ENST00000495090 IGLV4-3A0A075B6K6 122 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 A0A087WWL8 130 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 MRPS36P82909 103 aaKnown RBP7.19□□□□□ -1.26
SYNE1-230ENST00000495090 USMG5Q96IX5 58 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 JPT2Q9H910 190 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 F6UB75 175 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 I3L3M4 83 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 LST1O00453 97 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 IGHV3-30-3P0DP02 117 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 DEFB1P60022 68 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 IMUPQ9GZP8 106 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 TMEM126AQ9H061 195 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 EDA2RQ9HAV5 297 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 ZNF256Q9Y2P7 627 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-230ENST00000495090 ASPMQ8IZT6 3477 aa7.19□□□□□ -1.26
SYNE1-230ENST00000495090 TPRP12270 2363 aaKnown RBP7.18□□□□□ -1.26
SYNE1-230ENST00000495090 ADGRG4Q8IZF6 3080 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 IGHV3-16A0A0C4DH30 117 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 TIMM17BO60830 172 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 ACYP1P07311 99 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 ID1P41134 155 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 FOXC1Q12948 553 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 MIAQ16674 131 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms