RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CXCL1P09341 107 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 MIFP14174 115 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 FER1L6-AS1Q8NA97 138 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 TSKUQ8WUA8 353 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 A0A087WWC5 75 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 IGHV3-16A0A0C4DH30 117 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 A0A1W2PPQ1 181 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 AZU1P20160 251 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 EMP1P54849 157 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 ZNF493Q6ZR52 646 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 BORCS7Q96B45 105 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 KRTAP4-11Q9BYQ6 195 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 GSN-AS1Q9NRJ2 163 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 IL36BQ9NZH7 164 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 MDFICQ9P1T7 246 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 MUC4Q99102 2169 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 IGHV4-28A0A0C4DH34 117 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 ARMS2P0C7Q2 107 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 S100PP25815 95 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 KCNIP4Q6PIL6 250 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 RNASE8Q8TDE3 154 aaKnown RBP8.66□□□□□ -1.02
UPF3A-210ENST00000493727 PGLYRP4Q96LB8 373 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 GFRA4Q9GZZ7 299 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 NAT8BQ9UHF3 227 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 PHLDA3Q9Y5J5 127 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 HIGD1CA8MV81 97 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 DEFB4AO15263 64 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 NANOS2P60321 138 aaKnown RBP8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SSTP61278 116 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 ATRAIDQ6UW56 229 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SPXQ9BT56 116 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 MUC21A0A0G2JKD1 596 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 MUC21A0A140T8X8 626 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 SMIM27A0A1W2PRY6 76 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 FAM231BA6NCW3 169 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 F2Z2F3 143 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 M0R381 172 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 IGLC6P0CF74 106 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 RNASE3P12724 160 aaKnown RBP8.64□□□□□ -1.03
UPF3A-210ENST00000493727 DNLZQ5SXM8 178 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 LYZL1Q6UWQ5 148 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 Q8NAQ8 132 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 C11orf72Q8NBR9 251 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 GTSF1Q8WW33 167 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 C9orf85Q96MD7 179 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 NOP10Q9NPE3 64 aaKnown RBP8.64□□□□□ -1.03
UPF3A-210ENST00000493727 TMEM242Q9NWH2 141 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 URGCP-MRPS24S4R325 110 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 TRGV1A0A0A0MS02 117 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 TEX48A0A1B0GUV7 120 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 M0R2P5 195 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SNAI2O43623 268 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 OR5AL1P0C617 328 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 CTRLP40313 264 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 FAM3BP58499 235 aaPredicted RBP8.63□□□□□ -1.03
UPF3A-210ENST00000493727 CACNG7P62955 275 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 ZFP82Q8N141 532 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 NUP35Q8NFH5 326 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 OR10AG1Q8NH19 301 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 IMMP2LQ96T52 175 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 KRTAP4-2Q9BYR5 136 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SMCO4Q9NRQ5 59 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 MRPL16Q9NX20 251 aaKnown RBP8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SPINK4O60575 86 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
UPF3A-210ENST00000493727 RIGQ13278 110 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 TWIST1Q15672 202 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 ZNF575Q86XF7 245 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 SCRT2Q9NQ03 307 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 PKD1P98161 4303 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 A0A1B0GUT8 65 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 PLAC8L1A1L4L8 177 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 LYRM9A8MSI8 78 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 FOXA3P55318 350 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-210ENST00000493727 ZNF876PQ49A33 203 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 MRPL54Q6P161 138 aaKnown RBP8.61□□□□□ -1.03
UPF3A-210ENST00000493727 TMEM88Q6PEY1 159 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 CBLN2Q8IUK8 224 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 BTF3L4Q96K17 158 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 HSPG2P98160 4391 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 TRAV10A0A0B4J240 114 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12BA1L429 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 IGLL5B9A064 214 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 SCO1O75880 301 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE7O76087 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12FP0CL80 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12GP0CL81 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12IP0CL82 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DEFB130BP0DP73 79 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DEFB130AP0DP74 79 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 FAM222AQ5U5X8 452 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 SMIM15Q7Z3B0 74 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 AP1S3Q96PC3 154 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DKK2Q9UBU2 259 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 TRGV2A0A075B6R0 118 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 TRAV9-1A0A075B6T8 112 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12HA6NDE8 117 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 TRGC1P0CF51 173 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 SPART-AS1P0CW21 52 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms