RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 MUC21A0A140T8X8 626 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 TIRAPP58753 221 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 SSTP61278 116 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 OR10J3Q5JRS4 329 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 SPANXN1Q5VSR9 72 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 UFSP1Q6NVU6 142 aa10.21□□□□□ -0.77
TRIM54-204ENST00000488321 C14orf178Q8N769 122 aaPredicted RBP10.21□□□□□ -0.77
TRIM54-204ENST00000488321 TRAV8-6A0A0B4J262 113 aa10.2□□□□□ -0.78
TRIM54-204ENST00000488321 IGLV2-8P01709 118 aa10.2□□□□□ -0.78
TRIM54-204ENST00000488321 BTF3P20290 206 aaKnown RBP10.2□□□□□ -0.78
TRIM54-204ENST00000488321 OR2D3Q8NGH3 330 aa10.2□□□□□ -0.78
TRIM54-204ENST00000488321 SMIM12Q96EX1 92 aa10.2□□□□□ -0.78
TRIM54-204ENST00000488321 TPPP3Q9BW30 176 aa10.2□□□□□ -0.78
TRIM54-204ENST00000488321 TRBV20OR9-2A0A075B6H5 130 aa10.19□□□□□ -0.78
TRIM54-204ENST00000488321 CRYGDP07320 174 aa10.19□□□□□ -0.78
TRIM54-204ENST00000488321 DNAH10OSP0CZ25 163 aa10.19□□□□□ -0.78
TRIM54-204ENST00000488321 GTSF1LQ9H1H1 148 aa10.19□□□□□ -0.78
TRIM54-204ENST00000488321 Q9UF83 564 aa10.19□□□□□ -0.78
TRIM54-204ENST00000488321 IGHV3-38A0A0C4DH36 116 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 RBFOX3A6NFN3 312 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 SNAI2O43623 268 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 P01737 135 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 OR5AL1P0C617 328 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 GZMBP10144 247 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 LELP1Q5T871 98 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 SSBP4Q9BWG4 385 aaPredicted RBP10.18□□□□□ -0.78
TRIM54-204ENST00000488321 BIN3Q9NQY0 253 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 TNFRSF18Q9Y5U5 241 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 PKD1P98161 4303 aa10.18□□□□□ -0.78
TRIM54-204ENST00000488321 C19orf71A6NCJ1 209 aa10.17□□□□□ -0.78
TRIM54-204ENST00000488321 CEBPGP53567 150 aa10.17□□□□□ -0.78
TRIM54-204ENST00000488321 RPS20P60866 119 aaKnown RBP10.17□□□□□ -0.78
TRIM54-204ENST00000488321 ZNF56Q15929 161 aa10.17□□□□□ -0.78
TRIM54-204ENST00000488321 XKRY2A2RUG3 117 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 K7EP13 123 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 TOR2AQ5JU69 321 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 NFE4Q86UQ8 179 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 C10orf126Q8N4M7 172 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 FER1L6-AS1Q8NA97 138 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 EIF5A2Q9GZV4 153 aaKnown RBP10.16□□□□□ -0.78
TRIM54-204ENST00000488321 MSRB1Q9NZV6 116 aa10.16□□□□□ -0.78
TRIM54-204ENST00000488321 DNAH11Q96DT5 4516 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 F5H697 171 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 IGHV3-30P01768 117 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 IGHV3-33P01772 117 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 SMIM17P0DL12 118 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 LINC00694P0DN24 101 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 IGHV3-30-3P0DP02 117 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 IGHV3-30-5P0DP03 117 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 LYPD6BQ8NI32 183 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 AP1S3Q96PC3 154 aa10.15□□□□□ -0.78
TRIM54-204ENST00000488321 PKHD1P08F94 4074 aa10.15□□□□□ -0.79
TRIM54-204ENST00000488321 TRBV10-1A0A0K0K1A3 114 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 C16orf90A8MZG2 172 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 TMEM250H0YL14 139 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 IGLC6P0CF74 106 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 RAB4BP61018 213 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 RPL36AP83881 106 aaKnown RBP10.14□□□□□ -0.79
TRIM54-204ENST00000488321 LINC01556Q5JQF7 62 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 Q6ZRN7 208 aaPredicted RBP10.14□□□□□ -0.79
TRIM54-204ENST00000488321 NUDT10Q8NFP7 164 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 OCC1Q8TAD7 63 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 RPL36ALQ969Q0 106 aaKnown RBP10.14□□□□□ -0.79
TRIM54-204ENST00000488321 NUDT11Q96G61 164 aa10.14□□□□□ -0.79
TRIM54-204ENST00000488321 DYNC1H1Q14204 4646 aaKnown RBP10.14□□□□□ -0.79
TRIM54-204ENST00000488321 A0A087WWC5 75 aa10.13□□□□□ -0.79
TRIM54-204ENST00000488321 SPATA12Q7Z6I5 190 aa10.13□□□□□ -0.79
TRIM54-204ENST00000488321 RNASE7Q9H1E1 156 aaKnown RBP10.13□□□□□ -0.79
TRIM54-204ENST00000488321 K7EN84 100 aa10.12□□□□□ -0.79
TRIM54-204ENST00000488321 ERVFC1-1P60608 527 aa10.12□□□□□ -0.79
TRIM54-204ENST00000488321 CACNG7P62955 275 aa10.12□□□□□ -0.79
TRIM54-204ENST00000488321 RPP21Q9H633 154 aaKnown RBP10.12□□□□□ -0.79
TRIM54-204ENST00000488321 TRBV7-3A0A075B6L6 115 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 F2Z2F3 143 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 EREGO14944 169 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 MGPP08493 103 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 LYZL1Q6UWQ5 148 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 FAM210AQ96ND0 272 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 Q9HAA7 133 aa10.11□□□□□ -0.79
TRIM54-204ENST00000488321 KIAA1109Q2LD37 5005 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 IBA57-AS1B1ANH7 110 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 PSCAO43653 123 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 UBE2D3P61077 147 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 UBE2D2P62837 147 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 Q8N3U1 123 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 NEXN-AS1Q8NBZ9 246 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 HERC2O95714 4834 aa10.1□□□□□ -0.79
TRIM54-204ENST00000488321 KRTAP10-2P60368 255 aa10.09□□□□□ -0.79
TRIM54-204ENST00000488321 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.09□□□□□ -0.79
TRIM54-204ENST00000488321 OR10G8Q8NGN5 311 aa10.09□□□□□ -0.79
TRIM54-204ENST00000488321 SMIM7Q9BQ49 75 aa10.09□□□□□ -0.79
TRIM54-204ENST00000488321 KIF25-AS1Q9Y6Z4 181 aa10.09□□□□□ -0.79
TRIM54-204ENST00000488321 URGCP-MRPS24S4R325 110 aa10.09□□□□□ -0.79
TRIM54-204ENST00000488321 GATCO43716 136 aaKnown RBP10.08□□□□□ -0.8
TRIM54-204ENST00000488321 TRGC1P0CF51 173 aa10.08□□□□□ -0.8
TRIM54-204ENST00000488321 NTF3P20783 257 aa10.08□□□□□ -0.8
TRIM54-204ENST00000488321 ZNF727A8MUV8 499 aa10.07□□□□□ -0.8
TRIM54-204ENST00000488321 CTRLP40313 264 aa10.07□□□□□ -0.8
TRIM54-204ENST00000488321 TWIST1Q15672 202 aa10.07□□□□□ -0.8
TRIM54-204ENST00000488321 KCNIP4Q6PIL6 250 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms