RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 KRTAP4-5Q9BYR2 181 aa8.11□□□□□ -1.11
SYNE1-223ENST00000476519 JPT2Q9H910 190 aa8.11□□□□□ -1.11
SYNE1-223ENST00000476519 TRAV1-1A0A0B4J248 108 aa8.1□□□□□ -1.11
SYNE1-223ENST00000476519 ZFP82Q8N141 532 aa8.1□□□□□ -1.11
SYNE1-223ENST00000476519 Q8N1X5 172 aa8.1□□□□□ -1.11
SYNE1-223ENST00000476519 FAT1Q14517 4588 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 TMSB15BA0A087X1C1 80 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 TRBV10-1A0A0K0K1A3 114 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 A0A1B0GV50 99 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 PSCAO43653 123 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 CXCL1P09341 107 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 LAGE3Q14657 143 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 C14orf178Q8N769 122 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-223ENST00000476519 TM2D2Q9BX73 214 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 Q9UF83 564 aa8.09□□□□□ -1.11
SYNE1-223ENST00000476519 SCO2A0A1W2PP80 73 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 TEX46H3BTG2 121 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 M0R381 172 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 IGHV3-30P01768 117 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 IGHV3-33P01772 117 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 IGHV3-30-3P0DP02 117 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 IGHV3-30-5P0DP03 117 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 FAM74A4Q5TZK3 123 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 SSBP4Q9BWG4 385 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-223ENST00000476519 MANBALQ9NQG1 85 aa8.08□□□□□ -1.12
SYNE1-223ENST00000476519 A0A087WWL8 130 aa8.07□□□□□ -1.12
SYNE1-223ENST00000476519 TRAV8-3A0A0A6YYJ7 113 aa8.07□□□□□ -1.12
SYNE1-223ENST00000476519 LRCOL1A6NCL2 159 aa8.07□□□□□ -1.12
SYNE1-223ENST00000476519 TOR2AQ5JU69 321 aa8.07□□□□□ -1.12
SYNE1-223ENST00000476519 TCTE3Q8IZS6 198 aa8.07□□□□□ -1.12
SYNE1-223ENST00000476519 NTN5Q8WTR8 489 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-223ENST00000476519 TRBV7-3A0A075B6L6 115 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 OR5AL1P0C617 328 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 GCSHP23434 173 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 RPL35P42766 123 aaKnown RBP8.06□□□□□ -1.12
SYNE1-223ENST00000476519 RAB4BP61018 213 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 CCL20P78556 96 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 RPL36AP83881 106 aaKnown RBP8.06□□□□□ -1.12
SYNE1-223ENST00000476519 RPL36ALQ969Q0 106 aaKnown RBP8.06□□□□□ -1.12
SYNE1-223ENST00000476519 C11orf52Q96A22 123 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 Q9HAA7 133 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 GNG13Q9P2W3 67 aa8.06□□□□□ -1.12
SYNE1-223ENST00000476519 SNAI2O43623 268 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 FUSP35637 526 aaKnown RBP eCLIP8.05□□□□□ -1.12
SYNE1-223ENST00000476519 SULT1A2P50226 295 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 KRTAP10-1P60331 282 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 OR10G8Q8NGN5 311 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 COX11Q9Y6N1 276 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 URGCP-MRPS24S4R325 110 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 DNAH8Q96JB1 4490 aa8.05□□□□□ -1.12
SYNE1-223ENST00000476519 XGP55808 180 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 UBE2D3P61077 147 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 UBE2D2P62837 147 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 RPL19P84098 196 aaKnown RBP8.04□□□□□ -1.12
SYNE1-223ENST00000476519 NIT1Q86X76 327 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 Q8N814 137 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 OR10AG1Q8NH19 301 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 SMIM12Q96EX1 92 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 CHCHD7Q9BUK0 85 aa8.04□□□□□ -1.12
SYNE1-223ENST00000476519 IGLV5-52A0A0A0MRZ9 124 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 PDE6DO43924 150 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 ELOBQ15370 118 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 SPANXN1Q5VSR9 72 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 PRR27Q6MZM9 219 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 DAZ4Q86SG3 579 aaKnown RBP8.03□□□□□ -1.12
SYNE1-223ENST00000476519 SLC51BQ86UW2 128 aa8.03□□□□□ -1.12
SYNE1-223ENST00000476519 DAZAP1Q96EP5 407 aaKnown RBP8.03□□□□□ -1.12
SYNE1-223ENST00000476519 DAZ3Q9NR90 486 aaKnown RBP8.03□□□□□ -1.12
SYNE1-223ENST00000476519 IFNA1P01562 189 aa8.02□□□□□ -1.13
SYNE1-223ENST00000476519 C1QBP02746 253 aa8.02□□□□□ -1.13
SYNE1-223ENST00000476519 TAGLN2P37802 199 aaKnown RBP8.02□□□□□ -1.13
SYNE1-223ENST00000476519 RPS20P60866 119 aaKnown RBP8.02□□□□□ -1.13
SYNE1-223ENST00000476519 KCNIP4Q6PIL6 250 aa8.02□□□□□ -1.13
SYNE1-223ENST00000476519 Q8N3U1 123 aa8.02□□□□□ -1.13
SYNE1-223ENST00000476519 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-223ENST00000476519 RMI2Q96E14 147 aa8.02□□□□□ -1.13
SYNE1-223ENST00000476519 A0A087WX48 190 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 EPM2AB3EWF7 344 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 SMIM17P0DL12 118 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 GNG4P50150 75 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 MEF2BQ02080 365 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-223ENST00000476519 CENPWQ5EE01 88 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 Q6ZNX1 250 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 DERL1Q9BUN8 251 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 BIN3Q9NQY0 253 aa8.01□□□□□ -1.13
SYNE1-223ENST00000476519 TRBV6-8A0A0A6YYG3 113 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 XKRY2A2RUG3 117 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 RAB19A4D1S5 217 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 F5H697 171 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 IGLV2-8P01709 118 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 ZNF56Q15929 161 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 TMEM97Q5BJF2 176 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 TMEM70Q9BUB7 260 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 MED9Q9NWA0 146 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 VAX2Q9UIW0 290 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 KIF25-AS1Q9Y6Z4 181 aa8□□□□□ -1.13
SYNE1-223ENST00000476519 MUC21A0A0G2JKD1 596 aa7.99□□□□□ -1.13
SYNE1-223ENST00000476519 MUC21A0A140T8X8 626 aa7.99□□□□□ -1.13
SYNE1-223ENST00000476519 C19orf71A6NCJ1 209 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms