RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TRAV12-3A0A0B4J271 114 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 TSPAN19P0C672 248 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 LINC00694P0DN24 101 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 COX4I1P13073 169 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 SPCS2Q15005 226 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 C20orf197Q8N268 126 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 LZICQ8WZA0 190 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 SAR1AQ9NR31 198 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 NDUFA12Q9UI09 145 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 SSC5DA1L4H1 1573 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 ADGRB1O14514 1584 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 UNC13BO14795 1591 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 LAMB1P07942 1786 aa0.13□□□□□ -2.39
CCDC88A-212ENST00000474059 SSBP1Q04837 148 aaKnown RBP0.12□□□□□ -2.39
CCDC88A-212ENST00000474059 CTAGE3PQ8IX95 158 aa0.12□□□□□ -2.39
CCDC88A-212ENST00000474059 COX7B2Q8TF08 81 aa0.12□□□□□ -2.39
CCDC88A-212ENST00000474059 PARP14Q460N5 1801 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 J3QR89 54 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 PITX3O75364 302 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 ALX1Q15699 326 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 SLC48A1Q6P1K1 146 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 C4orf33Q8N1A6 199 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 SMIM11BQ8TCY0 68 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 Q96NJ1 140 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 CACNA1EQ15878 2313 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 SYNE2Q8WXH0 6885 aaKnown RBP0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 FHAD1B1AJZ9 1412 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 ABCA1O95477 2261 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 MYH6P13533 1939 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 AKAP11Q9UKA4 1901 aa0.11□□□□□ -2.39
CCDC88A-212ENST00000474059 TRBV7-1A0A0A6YYK4 115 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 LOC105371267A0A1B0GV96 52 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 M0R2Z0 102 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 NCR2O95944 276 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 PIRTP0C851 137 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 FAM74A4Q5TZK3 123 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 SPANXN1Q5VSR9 72 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 Q6ZUT4 128 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 ARFGEF1Q9Y6D6 1849 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 SPAG17Q6Q759 2223 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 ABCA4P78363 2273 aa0.1□□□□□ -2.39
CCDC88A-212ENST00000474059 SIPA1L3O60292 1781 aaPredicted RBP0.09□□□□□ -2.39
CCDC88A-212ENST00000474059 NAV2Q8IVL1 2488 aa0.09□□□□□ -2.39
CCDC88A-212ENST00000474059 TSTD1Q8NFU3 115 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 C10orf82Q8WW14 230 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 MAFIPQ8WZ33 124 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 TMEM242Q9NWH2 141 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 COPZ2Q9P299 210 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 V9GYV3 84 aa0.09□□□□□ -2.4
CCDC88A-212ENST00000474059 MAST4O15021 2626 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 K7ERU9 68 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 NPFFO15130 113 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 APODP05090 189 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 NMBP08949 121 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 SMIM21Q3B7S5 101 aa0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 C9orf116Q5BN46 136 aaPredicted RBP0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 ANP32BQ92688 251 aaKnown RBP0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 PSMG3Q9BT73 122 aaPredicted RBP0.08□□□□□ -2.4
CCDC88A-212ENST00000474059 TMEM2Q9UHN6 1383 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 BDP1A6H8Y1 2624 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 ACYP2P14621 99 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 UBE2D1P51668 147 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 COX6A2Q02221 97 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 Q5BKY6 102 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 RPRMQ9NS64 109 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 MED13LQ71F56 2210 aa0.07□□□□□ -2.4
CCDC88A-212ENST00000474059 LRP1Q07954 4544 aaKnown RBP0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 TTC28Q96AY4 2481 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 TRGV1A0A0A0MS02 117 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 IL5P05113 134 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 UBE2G1P62253 170 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 RPL7L1Q6DKI1 246 aaKnown RBP0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 F5P12259 2224 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 IBTKQ9P2D0 1353 aaPredicted RBP0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 FSIP2Q5CZC0 6907 aa0.06□□□□□ -2.4
CCDC88A-212ENST00000474059 DAPK1P53355 1430 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 GOLGA3Q08378 1498 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 CLPSL1A2RUU4 121 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 TMEM14DPA8MWL7 114 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 SPINK1P00995 79 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 EDDM3BP56851 147 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 RRAS2P62070 204 aaPredicted RBP0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 RPS25P62851 125 aaKnown RBP0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 SCIMPQ6UWF3 145 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 Q6ZRX8 168 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 TPT1P8Q9HAU6 139 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 SPEF2Q9C093 1822 aa0.05□□□□□ -2.4
CCDC88A-212ENST00000474059 MYOM3Q5VTT5 1437 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 JMJD1CQ15652 2540 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 A6NIN4 97 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 IFNA17P01571 189 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 PIPP12273 146 aaPredicted RBP0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 COPZ1P61923 177 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 SMCO1Q147U7 214 aa0.04□□□□□ -2.4
CCDC88A-212ENST00000474059 TPRP12270 2363 aaKnown RBP0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 GCHFRP30047 84 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 GUCA1AP43080 201 aaPredicted RBP0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 INSL4Q14641 139 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 SPTSSAQ969W0 71 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms