RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 SLC51BQ86UW2 128 aa8.08□□□□□ -1.12
SYNE1-221ENST00000472563 ZFP82Q8N141 532 aa8.08□□□□□ -1.12
SYNE1-221ENST00000472563 KRTAP17-1Q9BYP8 105 aa8.08□□□□□ -1.12
SYNE1-221ENST00000472563 GAGE12JA6NER3 117 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 M0R381 172 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 EREGO14944 169 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 RPL35P42766 123 aaKnown RBP8.07□□□□□ -1.12
SYNE1-221ENST00000472563 GAGE1Q13065 139 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 GAGE4Q13068 117 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 GAGE5Q13069 117 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 GAGE13Q4V321 117 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 C14orf178Q8N769 122 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-221ENST00000472563 PGPEP1Q9NXJ5 209 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 HSPG2P98160 4391 aa8.07□□□□□ -1.12
SYNE1-221ENST00000472563 A0A087WTM6 91 aa8.06□□□□□ -1.12
SYNE1-221ENST00000472563 A0A087WWL8 130 aa8.06□□□□□ -1.12
SYNE1-221ENST00000472563 IBA57-AS1B1ANH7 110 aa8.06□□□□□ -1.12
SYNE1-221ENST00000472563 FAM74A4Q5TZK3 123 aa8.06□□□□□ -1.12
SYNE1-221ENST00000472563 SSBP4Q9BWG4 385 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-221ENST00000472563 Q9UF83 564 aa8.06□□□□□ -1.12
SYNE1-221ENST00000472563 APOBP04114 4563 aaKnown RBP8.06□□□□□ -1.12
SYNE1-221ENST00000472563 A0A087WWC5 75 aa8.05□□□□□ -1.12
SYNE1-221ENST00000472563 TRBV10-1A0A0K0K1A3 114 aa8.05□□□□□ -1.12
SYNE1-221ENST00000472563 SNAI2O43623 268 aa8.05□□□□□ -1.12
SYNE1-221ENST00000472563 RPL19P84098 196 aaKnown RBP8.05□□□□□ -1.12
SYNE1-221ENST00000472563 MEF2BQ02080 365 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-221ENST00000472563 AKAP14Q86UN6 197 aa8.05□□□□□ -1.12
SYNE1-221ENST00000472563 DERL1Q9BUN8 251 aa8.05□□□□□ -1.12
SYNE1-221ENST00000472563 PDE6DO43924 150 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 IFNA1P01562 189 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 OR5AL1P0C617 328 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 PRR27Q6MZM9 219 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 CDPF1Q6NVV7 123 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 OR10AG1Q8NH19 301 aa8.04□□□□□ -1.12
SYNE1-221ENST00000472563 IGLV2-8P01709 118 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 IGHV3-30P01768 117 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 IGHV3-33P01772 117 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 IGHV3-30-3P0DP02 117 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 IGHV3-30-5P0DP03 117 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 BCL2P10415 239 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 LAGE3Q14657 143 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 CENPWQ5EE01 88 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 C9orf62Q8N4C0 152 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 SMIM12Q96EX1 92 aa8.03□□□□□ -1.12
SYNE1-221ENST00000472563 RAB19A4D1S5 217 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 TAGLN2P37802 199 aaKnown RBP8.02□□□□□ -1.13
SYNE1-221ENST00000472563 GNG4P50150 75 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 RAB4BP61018 213 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 RPL36AP83881 106 aaKnown RBP8.02□□□□□ -1.13
SYNE1-221ENST00000472563 SPANXN1Q5VSR9 72 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 OR10G8Q8NGN5 311 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 RPL36ALQ969Q0 106 aaKnown RBP8.02□□□□□ -1.13
SYNE1-221ENST00000472563 MED9Q9NWA0 146 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 VAX2Q9UIW0 290 aa8.02□□□□□ -1.13
SYNE1-221ENST00000472563 hCG_2014768A0A024R1R8 64 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 C19orf71A6NCJ1 209 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 LRCOL1A6NCL2 159 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 PSCAO43653 123 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 RPS20P60866 119 aaKnown RBP8.01□□□□□ -1.13
SYNE1-221ENST00000472563 UBE2D3P61077 147 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 UBE2D2P62837 147 aa8.01□□□□□ -1.13
SYNE1-221ENST00000472563 DAZAP1Q96EP5 407 aaKnown RBP8.01□□□□□ -1.13
SYNE1-221ENST00000472563 TRBV20OR9-2A0A075B6H5 130 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 TRBV7-3A0A075B6L6 115 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 MUC21A0A0G2JKD1 596 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 MUC21A0A140T8X8 626 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 IGLC6P0CF74 106 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 TOR2AQ5JU69 321 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 Q8N3U1 123 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 OR2D3Q8NGH3 330 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 TM2D2Q9BX73 214 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 Q9HAA7 133 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 BIN3Q9NQY0 253 aa8□□□□□ -1.13
SYNE1-221ENST00000472563 TRAV8-3A0A0A6YYJ7 113 aa7.99□□□□□ -1.13
SYNE1-221ENST00000472563 ZNF56Q15929 161 aa7.99□□□□□ -1.13
SYNE1-221ENST00000472563 DAZ4Q86SG3 579 aaKnown RBP7.99□□□□□ -1.13
SYNE1-221ENST00000472563 MAPKAPK5-AS1Q8N8E1 139 aa7.99□□□□□ -1.13
SYNE1-221ENST00000472563 DAZ3Q9NR90 486 aaKnown RBP7.99□□□□□ -1.13
SYNE1-221ENST00000472563 KIF25-AS1Q9Y6Z4 181 aa7.99□□□□□ -1.13
SYNE1-221ENST00000472563 XKRY2A2RUG3 117 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 P01737 135 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 SMIM17P0DL12 118 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 GZMBP10144 247 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
SYNE1-221ENST00000472563 BLOC1S1P78537 153 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 NIT1Q86X76 327 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 FER1L6-AS1Q8NA97 138 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 NEXN-AS1Q8NBZ9 246 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 AP1S3Q96PC3 154 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 CHCHD7Q9BUK0 85 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 KRTAP4-5Q9BYR2 181 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 URGCP-MRPS24S4R325 110 aa7.98□□□□□ -1.13
SYNE1-221ENST00000472563 RBFOX3A6NFN3 312 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 F2Z2F3 143 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 F5H697 171 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 SSTP61278 116 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 CACNG7P62955 275 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 ALKAL2Q6UX46 152 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 Q8N1X5 172 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 NTN5Q8WTR8 489 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms