RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 Q8NBF4 154 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 OR2K2Q8NGT1 345 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 RPUSD4Q96CM3 377 aaKnown RBP3.34□□□□□ -1.87
CSMD3-205ENST00000462254 MRAP2Q96G30 205 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 FAM19A4Q96LR4 140 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 LINC00479Q96M42 142 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 NKX6-2Q9C056 277 aaPredicted RBP3.34□□□□□ -1.87
CSMD3-205ENST00000462254 SLC35B3Q9H1N7 401 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 SMDT1Q9H4I9 107 aa3.34□□□□□ -1.87
CSMD3-205ENST00000462254 COL6A5A8TX70 2615 aa3.34□□□□□ -1.88
CSMD3-205ENST00000462254 NACAE9PAV3 2078 aa3.34□□□□□ -1.88
CSMD3-205ENST00000462254 NOTCH3Q9UM47 2321 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TRAV8-4A0A0B4J246 113 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 A0A0J9YX75 114 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 LOC105371267A0A1B0GV96 52 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TINCRA0A1B0GVN0 87 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 OR4C46A6NHA9 309 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 F8W036 122 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 DUSP14O95147 198 aaKnown RBP3.33□□□□□ -1.88
CSMD3-205ENST00000462254 IGLV2-8P01709 118 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 P01737 135 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 RPL35P42766 123 aaKnown RBP3.33□□□□□ -1.88
CSMD3-205ENST00000462254 DEFB131AP59861 70 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 RPL36AP83881 106 aaKnown RBP3.33□□□□□ -1.88
CSMD3-205ENST00000462254 FLI1Q01543 452 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-205ENST00000462254 ERCC8Q13216 396 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 GUCA2BQ16661 112 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 ZNF876PQ49A33 203 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 PSMG4Q5JS54 123 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 C10orf91Q5T1B1 145 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 C2orf66Q6UXQ4 117 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 Q86TA4 180 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TMEM75Q8N9X5 138 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 Q8TAT8 98 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 CMTM2Q8TAZ6 248 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 HIST1H2BAQ96A08 127 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TVP23CQ96ET8 276 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 IGF2BP2-AS1Q96M15 143 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 VGLL1Q99990 258 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 SMIM7Q9BQ49 75 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TCEAL7Q9BRU2 100 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 SEC11CQ9BY50 192 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 KRTAP2-2Q9BYT5 123 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 WFDC10AQ9H1F0 79 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 CARHSP1Q9Y2V2 147 aaKnown RBP3.33□□□□□ -1.88
CSMD3-205ENST00000462254 TRRAPQ9Y4A5 3859 aa3.33□□□□□ -1.88
CSMD3-205ENST00000462254 MUC4Q99102 2169 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 RBAKDNA6NC62 111 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 KNCNA6PVL3 124 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 A8MTW9 85 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 ZNF727A8MUV8 499 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 C9JCJ5 164 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 LTAP01374 205 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 CSN1S1P47710 185 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 UBE2G1P62253 170 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 SNRPD3P62318 126 aaKnown RBP3.32□□□□□ -1.88
CSMD3-205ENST00000462254 RPL23P62829 140 aaKnown RBP3.32□□□□□ -1.88
CSMD3-205ENST00000462254 HIST1H1AQ02539 215 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-205ENST00000462254 EGFEM1PQ0D2K5 195 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 KIAA0087Q14695 138 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 TMEM183BQ1AE95 376 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 CENPWQ5EE01 88 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 SAMD13Q5VXD3 122 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 TEX43Q6ZNM6 134 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 FAM19A5Q7Z5A7 132 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-205ENST00000462254 PRNTQ86SH4 94 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 OR8A1Q8NGG7 326 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 RNF185Q96GF1 192 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 FMC1Q96HJ9 113 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 AGPAT4-IT1Q9H0P7 198 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 SDF2L1Q9HCN8 221 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 PSG8Q9UQ74 426 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 TP53TG1Q9Y2A0 90 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 PKD1L1Q8TDX9 2849 aa3.32□□□□□ -1.88
CSMD3-205ENST00000462254 IGLV7-46A0A075B6I9 117 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 TRBV6-1A0A0K0K1D8 114 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 OR11H12B2RN74 326 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 KRBOX1C9JBD0 128 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 IGKV3-20P01619 116 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 APOC3P02656 99 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 HLA-DRB4P13762 266 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 GNG4P50150 75 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 ZNF80P51504 273 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-205ENST00000462254 ZNF138P52744 262 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 KRTAP21-3Q3LHN1 58 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 TMEM78Q5T7P6 136 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 PRR9Q5T870 116 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 AMTNQ6UX39 209 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 LINC00322Q6ZN03 302 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-205ENST00000462254 FOXI2Q6ZQN5 318 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 LINC01551Q86U37 167 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 BAGE2Q86Y30 109 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 ZFAND2AQ8N6M9 145 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 C11orf72Q8NBR9 251 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 ZC2HC1AQ96GY0 325 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 TMEM208Q9BTX3 173 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 DHRS4-AS1Q9P1J3 65 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 ZNF492Q9P255 531 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 NAT8Q9UHE5 227 aa3.31□□□□□ -1.88
CSMD3-205ENST00000462254 HLA-DRB4X5D2U9 266 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms