RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 INAFM2P0DMQ5 153 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 BUB1B-PAK6H3BSN5 160 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 CRIP3Q6Q6R5 217 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PATE2Q6UY27 113 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 SORL1Q92673 2214 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRRC2CQ9Y520 2896 aaKnown RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 I3L3M4 83 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV3-33P01772 117 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 A0A087WVE0 104 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 SRRM4A7MD48 611 aaKnown RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 MRPL14Q6P1L8 145 aaKnown RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 MUC6Q6W4X9 2439 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 EBI3Q14213 229 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 SOCS3O14543 225 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 TRBV7-6A0A0J9YX20 115 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 H3BS24 57 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 OTOGLQ3ZCN5 2332 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 COL4A6Q14031 1691 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 C19orf71A6NCJ1 209 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 TRGV3P03979 118 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 TIMM21Q9BVV7 248 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 TEX22C9J3V5 150 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 FOXL2NBQ6ZUU3 175 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 LINC01619G3V211 115 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 C9orf85Q96MD7 179 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 COL5A1P20908 1838 aaPredicted RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 CRIP1P50238 77 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 LINC00482Q8N8I6 264 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 POM121L12Q8N7R1 296 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 ADAMTSL4-AS1Q5T5F5 129 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 Q96MF0 132 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 ZNF561-AS1K7EIQ3 104 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 BRWD1-AS2P59051 145 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 NCR3O14931 201 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 FGF23Q9GZV9 251 aaPredicted RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 PCDH15Q96QU1 1955 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 PSPNO60542 156 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 CRYGDP07320 174 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV1-2P23083 117 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 ZNF672Q499Z4 452 aaPredicted RBP2.63□□□□□ -1.99
SYNE1-212ENST00000423061 Q5XG85 94 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 SAP25Q8TEE9 199 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 ZMAT4Q9H898 229 aa2.63□□□□□ -1.99
SYNE1-212ENST00000423061 A0A0G2JNJ9 132 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 Q9UFV3 132 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 FUSP35637 526 aaKnown RBP eCLIP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 HIVEP2P31629 2446 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 C11orf86A6NJI1 115 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 LEPROTO15243 131 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 DAZ2Q13117 558 aaKnown RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 RPL39LQ96EH5 51 aaKnown RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 DAZ3Q9NR90 486 aaKnown RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM75Q8N9X5 138 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV3-7A0A075B6H7 116 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 F8VRH5 84 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 C15orf65H3BRN8 121 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 XCL1P47992 114 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 SMCR5Q8TEV8 140 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IMUPQ9GZP8 106 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 XCL2Q9UBD3 114 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CTSZQ9UBR2 303 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 VCYO14598 125 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CXCL5P42830 114 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CRIPAKQ8N1N5 446 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 TNRC6BQ9UPQ9 1833 aaKnown RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CFHR1Q03591 330 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 C11orf53Q8IXP5 236 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 EGR2P11161 476 aaPredicted RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 BSPH1Q075Z2 132 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 SONP18583 2426 aaKnown RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 SLPIP03973 132 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV3OR2-268A0A0C4DH90 116 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 SMIM2Q9BVW6 85 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 DPM3Q9P2X0 92 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 HILS1P60008 231 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 HAMPP81172 84 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CCDC168Q8NDH2 2452 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 LINC00158P58513 81 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IMMP1LQ96LU5 166 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 A0A096LNJ9 63 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 GGNQ86UU5 652 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 TP53TG1Q9Y2A0 90 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 TRBV12-3P01733 135 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV3-30P01768 117 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 IGHV3-30-5P0DP03 117 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM167AQ8TBQ9 72 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 ANKRD11Q6UB99 2663 aaPredicted RBP2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CCL3L1P16619 93 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 C2orf66Q6UXQ4 117 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 NOTCH2Q04721 2471 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 A0A0J9YY99 117 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 OXTP01178 125 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 LYPD1Q8N2G4 141 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 DEFB124Q8NES8 71 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 P0C879 139 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CYSTM1Q9H1C7 97 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 CEP192Q8TEP8 1941 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 BUB3O43684 328 aa2.62□□□□□ -1.99
SYNE1-212ENST00000423061 PIP4P1Q86T03 277 aa2.61□□□□□ -1.99
SYNE1-212ENST00000423061 Q6ZSV7 163 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms