RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CHAC1Q9BUX1 264 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 FLNCQ14315 2725 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 CENPEQ02224 2701 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 TRAV4A0A0B4J268 109 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 TRAV17A0A0B4J275 112 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 UBE2L5PA0A1B0GUS4 154 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 GGTLC3B5MD39 225 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 K7ERJ3 54 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 CXCL5P42830 114 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 HERVK_113P61574 105 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 PLGLB1Q02325 96 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 AMTNQ6UX39 209 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 TMEM86BQ8N661 226 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 FDCSPQ8NFU4 85 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 HDHD3Q9BSH5 251 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-207ENST00000419472 OR2H1Q9GZK4 316 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 PBOV1Q9GZY1 135 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 C21orf62Q9NYP8 219 aa3.59□□□□□ -1.83
VPS13A-207ENST00000419472 ZNF706Q9Y5V0 76 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-207ENST00000419472 AKAP6Q13023 2319 aa3.59□□□□□ -1.84
VPS13A-207ENST00000419472 IGLV3-32A0A0A0MS00 114 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 TRAV8-3A0A0A6YYJ7 113 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 IGHV3-74A0A0B4J1X5 117 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 PIGBOS1A0A0B4J2F0 54 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 KRTAP29-1A8MX34 341 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-207ENST00000419472 CSN1S1P47710 185 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 EMP1P54849 157 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 SLC38A11Q08AI6 406 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 RTL8BQ17RB0 113 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 TEN1Q86WV5 123 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 NUP35Q8NFH5 326 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 PLCE1Q9P212 2302 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 ABCA4P78363 2273 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 SYNGR2O43760 224 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 IGHMP01871 453 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 IGLC6P0CF74 106 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 NMUP48645 174 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 EDDM3AQ14507 147 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 RRN3P1Q2M238 152 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 CENPWQ5EE01 88 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 C6orf201Q7Z4U5 140 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 SBSPONQ8IVN8 264 aa3.58□□□□□ -1.84
VPS13A-207ENST00000419472 FGF23Q9GZV9 251 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-207ENST00000419472 TCRBV4S1A1TA0A5B7 111 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 M0R2P5 195 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 OR2H2O95918 312 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 RBM11P57052 281 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 TMEM14EPQ6UXP3 125 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 AAED1Q7RTV5 226 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 OR51H1Q8NH63 302 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 TMEM147Q9BVK8 224 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 TTTY12Q9BZ98 90 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 RNASE7Q9H1E1 156 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 NHP2Q9NX24 153 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 GTF3C1Q12789 2109 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 INTS1Q8N201 2190 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 DIDO1Q9BTC0 2240 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 IGHV3-64DA0A0J9YX35 117 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 INS-IGF2F8WCM5 200 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 NCR2O95944 276 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 C12orf74Q32Q52 190 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 LGALS9BQ3B8N2 356 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 FBXL19-AS1Q494R0 122 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 PSMG4Q5JS54 123 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 LGALS9CQ6DKI2 356 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 Q6P435 159 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 ZGRF1Q86YA3 2104 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 NPCDR1Q9BY65 106 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 PKIGQ9Y2B9 76 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 CSMD1Q96PZ7 3565 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 STAB1Q9NY15 2570 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 JMJD1CQ15652 2540 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 KLLNB2CW77 178 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 MRPL33O75394 65 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 IAPPP10997 89 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 ZNF32P17041 273 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 HERVK_113P63121 156 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 C9orf129Q5T035 196 aaKnown RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 FAM222AQ5U5X8 452 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 ATP5L2Q7Z4Y8 100 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 Q8N9P0 234 aaPredicted RBP3.57□□□□□ -1.84
VPS13A-207ENST00000419472 FAM104AQ969W3 186 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 IDI2-AS1Q9NZ38 188 aa3.57□□□□□ -1.84
VPS13A-207ENST00000419472 KIAA2026Q5HYC2 2103 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 DCHS2Q6V1P9 2916 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 MED12LQ86YW9 2145 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 IGKV1-9A0A0C4DH69 117 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 M0R135 149 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 ATP5G1P05496 136 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 GNG5P63218 68 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 HES1Q14469 280 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 FXYD3Q14802 87 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 MDP1Q86V88 176 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 PCP2Q8IVA1 136 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 OR11H6Q8NGC7 330 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 ZNF799Q96GE5 643 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 C16orf74Q96GX8 76 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 SHANK1Q9Y566 2161 aa3.56□□□□□ -1.84
VPS13A-207ENST00000419472 FBN1P35555 2871 aaKnown RBP3.56□□□□□ -1.84
VPS13A-207ENST00000419472 A8MWL6 223 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms