RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 Q6ZSN1 163 aa14.94□□□□□ -0.02
CLN3-207ENST00000395653 A0A087WWL8 130 aa14.93□□□□□ -0.02
CLN3-207ENST00000395653 NBDYA0A0U1RRE5 68 aa14.93□□□□□ -0.02
CLN3-207ENST00000395653 RNASE7Q9H1E1 156 aaKnown RBP14.93□□□□□ -0.02
CLN3-207ENST00000395653 SMDT1Q9H4I9 107 aa14.93□□□□□ -0.02
CLN3-207ENST00000395653 ZNF727A8MUV8 499 aa14.92□□□□□ -0.02
CLN3-207ENST00000395653 RPP21Q9H633 154 aaKnown RBP14.92□□□□□ -0.02
CLN3-207ENST00000395653 MUC21A0A0G2JKD1 596 aa14.92□□□□□ -0.02
CLN3-207ENST00000395653 MUC21A0A140T8X8 626 aa14.92□□□□□ -0.02
CLN3-207ENST00000395653 PEA15Q15121 130 aa14.92□□□□□ -0.02
CLN3-207ENST00000395653 FAM231DQ6ZW35 169 aa14.92□□□□□ -0.02
CLN3-207ENST00000395653 A0A1W2PPQ1 181 aa14.91□□□□□ -0.02
CLN3-207ENST00000395653 F2Z2F3 143 aa14.91□□□□□ -0.02
CLN3-207ENST00000395653 TIRAPP58753 221 aa14.91□□□□□ -0.02
CLN3-207ENST00000395653 LINC01551Q86U37 167 aa14.91□□□□□ -0.02
CLN3-207ENST00000395653 TPPP3Q9BW30 176 aa14.91□□□□□ -0.02
CLN3-207ENST00000395653 CACNG7P62955 275 aa14.9□□□□□ -0.02
CLN3-207ENST00000395653 FAM74A3Q4VXF1 159 aa14.9□□□□□ -0.02
CLN3-207ENST00000395653 SIVA1O15304 175 aa14.89□□□□□ -0.03
CLN3-207ENST00000395653 TTC32Q5I0X7 151 aa14.89□□□□□ -0.03
CLN3-207ENST00000395653 C14orf178Q8N769 122 aaPredicted RBP14.89□□□□□ -0.03
CLN3-207ENST00000395653 AP1S3Q96PC3 154 aa14.89□□□□□ -0.03
CLN3-207ENST00000395653 C9JQL5 133 aa14.88□□□□□ -0.03
CLN3-207ENST00000395653 LINC00694P0DN24 101 aa14.88□□□□□ -0.03
CLN3-207ENST00000395653 RAB14P61106 215 aa14.88□□□□□ -0.03
CLN3-207ENST00000395653 SRSF3P84103 164 aaKnown RBP14.88□□□□□ -0.03
CLN3-207ENST00000395653 EPPK1P58107 5090 aaKnown RBP14.88□□□□□ -0.03
CLN3-207ENST00000395653 GATCO43716 136 aaKnown RBP14.87□□□□□ -0.03
CLN3-207ENST00000395653 CTRLP40313 264 aa14.87□□□□□ -0.03
CLN3-207ENST00000395653 ERVFC1-1P60608 527 aa14.87□□□□□ -0.03
CLN3-207ENST00000395653 RAB4BP61018 213 aa14.87□□□□□ -0.03
CLN3-207ENST00000395653 SSTP61278 116 aa14.87□□□□□ -0.03
CLN3-207ENST00000395653 LYZL1Q6UWQ5 148 aa14.87□□□□□ -0.03
CLN3-207ENST00000395653 GAGE12JA6NER3 117 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 GAGE1Q13065 139 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 GAGE4Q13068 117 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 GAGE5Q13069 117 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 GAGE13Q4V321 117 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 CT83Q5H943 113 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 SOHLH1Q5JUK2 328 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 ATP6V0E2Q8NHE4 81 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 FRAS1Q86XX4 4008 aa14.86□□□□□ -0.03
CLN3-207ENST00000395653 TRBV10-1A0A0K0K1A3 114 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 SMIM17P0DL12 118 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 ZNF56Q15929 161 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 TMEM241Q24JQ0 296 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 C1orf134Q5TEV5 83 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 WDR73Q6P4I2 378 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 LINC00336Q6ZUF6 198 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 CNFNQ9BYD5 112 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 Q9UF83 564 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 KIF25-AS1Q9Y6Z4 181 aa14.85□□□□□ -0.03
CLN3-207ENST00000395653 RTL8CO15255 209 aa14.84□□□□□ -0.03
CLN3-207ENST00000395653 KRTAP1-5Q9BYS1 174 aa14.84□□□□□ -0.03
CLN3-207ENST00000395653 GTSF1LQ9H1H1 148 aa14.84□□□□□ -0.03
CLN3-207ENST00000395653 MSRB1Q9NZV6 116 aa14.84□□□□□ -0.03
CLN3-207ENST00000395653 DNAH17Q9UFH2 4485 aa14.84□□□□□ -0.03
CLN3-207ENST00000395653 A8MWL6 223 aa14.83□□□□□ -0.03
CLN3-207ENST00000395653 GTSF1Q8WW33 167 aa14.83□□□□□ -0.03
CLN3-207ENST00000395653 OSTCQ9NRP0 149 aa14.83□□□□□ -0.03
CLN3-207ENST00000395653 TRGC1P0CF51 173 aa14.83□□□□□ -0.04
CLN3-207ENST00000395653 NTF3P20783 257 aa14.83□□□□□ -0.04
CLN3-207ENST00000395653 LINC00315P59091 139 aa14.83□□□□□ -0.04
CLN3-207ENST00000395653 WFDC10BQ8IUB3 73 aa14.83□□□□□ -0.04
CLN3-207ENST00000395653 NAT8Q9UHE5 227 aa14.83□□□□□ -0.04
CLN3-207ENST00000395653 RPL23P62829 140 aaKnown RBP14.82□□□□□ -0.04
CLN3-207ENST00000395653 CLLU1Q5K131 121 aa14.82□□□□□ -0.04
CLN3-207ENST00000395653 C6orf223Q8N319 242 aa14.82□□□□□ -0.04
CLN3-207ENST00000395653 ISOC2Q96AB3 205 aa14.82□□□□□ -0.04
CLN3-207ENST00000395653 FAT2Q9NYQ8 4349 aa14.81□□□□□ -0.04
CLN3-207ENST00000395653 F5H697 171 aa14.81□□□□□ -0.04
CLN3-207ENST00000395653 BTF3P20290 206 aaKnown RBP14.81□□□□□ -0.04
CLN3-207ENST00000395653 RPL36AP83881 106 aaKnown RBP14.81□□□□□ -0.04
CLN3-207ENST00000395653 LELP1Q5T871 98 aa14.81□□□□□ -0.04
CLN3-207ENST00000395653 OR10G8Q8NGN5 311 aa14.81□□□□□ -0.04
CLN3-207ENST00000395653 RPL36ALQ969Q0 106 aaKnown RBP14.81□□□□□ -0.04
CLN3-207ENST00000395653 TRAV8-6A0A0B4J262 113 aa14.8□□□□□ -0.04
CLN3-207ENST00000395653 K7EP13 123 aa14.8□□□□□ -0.04
CLN3-207ENST00000395653 DNAH10OSP0CZ25 163 aa14.8□□□□□ -0.04
CLN3-207ENST00000395653 FOXA3P55318 350 aaPredicted RBP14.8□□□□□ -0.04
CLN3-207ENST00000395653 IFITM2Q01629 132 aa14.8□□□□□ -0.04
CLN3-207ENST00000395653 C15orf54Q8N8G6 183 aa14.8□□□□□ -0.04
CLN3-207ENST00000395653 TRBV7-3A0A075B6L6 115 aa14.79□□□□□ -0.04
CLN3-207ENST00000395653 EVI2AP22794 236 aa14.79□□□□□ -0.04
CLN3-207ENST00000395653 ADIRFQ15847 76 aa14.79□□□□□ -0.04
CLN3-207ENST00000395653 OR10J3Q5JRS4 329 aa14.79□□□□□ -0.04
CLN3-207ENST00000395653 TSKUQ8WUA8 353 aa14.79□□□□□ -0.04
CLN3-207ENST00000395653 FAM231BA6NCW3 169 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 UBE2D3P61077 147 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 UBE2D2P62837 147 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 TWIST1Q15672 202 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 GFRA4Q9GZZ7 299 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 DPH3P1Q9H4G8 78 aa14.78□□□□□ -0.04
CLN3-207ENST00000395653 TRAV9-2A0A087WT02 112 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 A0A087WWC5 75 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 IGHV3-38A0A0C4DH36 116 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 PRSS29PA6NIE9 313 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 MGPP08493 103 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 NEXN-AS1Q8NBZ9 246 aa14.77□□□□□ -0.04
CLN3-207ENST00000395653 V9GYV3 84 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms