RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MRPS16Q9Y3D3 137 aaKnown RBP9.2□□□□□ -0.94
VPS28-202ENST00000377348 FAT2Q9NYQ8 4349 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 DNAH17Q9UFH2 4485 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 ZNF727A8MUV8 499 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 NDUFS6O75380 124 aaKnown RBP9.19□□□□□ -0.94
VPS28-202ENST00000377348 CRYGDP07320 174 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 RPS20P60866 119 aaKnown RBP9.19□□□□□ -0.94
VPS28-202ENST00000377348 SPANXN1Q5VSR9 72 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 Q6ZR54 194 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 C14orf178Q8N769 122 aaPredicted RBP9.19□□□□□ -0.94
VPS28-202ENST00000377348 PRADC1Q9BSG0 188 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 UPK3BQ9BT76 320 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 Q9H8V8 135 aa9.19□□□□□ -0.94
VPS28-202ENST00000377348 RPP21Q9H633 154 aaKnown RBP9.18□□□□□ -0.94
VPS28-202ENST00000377348 NBDYA0A0U1RRE5 68 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 XKRY2A2RUG3 117 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GAGE12JA6NER3 117 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 RHODO00212 210 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GAGE1Q13065 139 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GAGE4Q13068 117 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GAGE5Q13069 117 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GAGE13Q4V321 117 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 LYZL1Q6UWQ5 148 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 LINC01551Q86U37 167 aa9.17□□□□□ -0.94
VPS28-202ENST00000377348 GATCO43716 136 aaKnown RBP9.16□□□□□ -0.94
VPS28-202ENST00000377348 PEA15Q15121 130 aa9.16□□□□□ -0.94
VPS28-202ENST00000377348 KRTAP1-5Q9BYS1 174 aa9.16□□□□□ -0.94
VPS28-202ENST00000377348 MSRB1Q9NZV6 116 aa9.16□□□□□ -0.94
VPS28-202ENST00000377348 LY96Q9Y6Y9 160 aa9.16□□□□□ -0.94
VPS28-202ENST00000377348 ERVFC1-1P60608 527 aa9.15□□□□□ -0.94
VPS28-202ENST00000377348 ZNF56Q15929 161 aa9.15□□□□□ -0.94
VPS28-202ENST00000377348 FAM231DQ6ZW35 169 aa9.15□□□□□ -0.94
VPS28-202ENST00000377348 BIRC6Q9NR09 4857 aa9.15□□□□□ -0.95
VPS28-202ENST00000377348 HECTD4Q9Y4D8 3996 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 A0A1W2PPQ1 181 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 RTL8CO15255 209 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 SIVA1O15304 175 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 LINC00694P0DN24 101 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 CTRLP40313 264 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 RAB14P61106 215 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 SH2D6Q7Z4S9 175 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 WFDC10BQ8IUB3 73 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 ATP6V0E2Q8NHE4 81 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 GTSF1Q8WW33 167 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 AP1S3Q96PC3 154 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 KIF25-AS1Q9Y6Z4 181 aa9.14□□□□□ -0.95
VPS28-202ENST00000377348 F2Z2F3 143 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 NTF3P20783 257 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 RPL23P62829 140 aaKnown RBP9.13□□□□□ -0.95
VPS28-202ENST00000377348 CACNG7P62955 275 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 TMEM241Q24JQ0 296 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 FAM74A3Q4VXF1 159 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 SMDT1Q9H4I9 107 aa9.13□□□□□ -0.95
VPS28-202ENST00000377348 F5H697 171 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 MGPP08493 103 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 SMIM17P0DL12 118 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 EVI2AP22794 236 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 LINC00315P59091 139 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 RAB4BP61018 213 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 ADIRFQ15847 76 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 C1orf134Q5TEV5 83 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 ISOC2Q96AB3 205 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 GTSF1LQ9H1H1 148 aa9.12□□□□□ -0.95
VPS28-202ENST00000377348 A8MWL6 223 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 TIRAPP58753 221 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 TWIST1Q15672 202 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 TTC32Q5I0X7 151 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 SOHLH1Q5JUK2 328 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 CLLU1Q5K131 121 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 PGLYRP4Q96LB8 373 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 OSTCQ9NRP0 149 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 NAT8Q9UHE5 227 aa9.11□□□□□ -0.95
VPS28-202ENST00000377348 CT83Q5H943 113 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 OR10J3Q5JRS4 329 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 C6orf223Q8N319 242 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 NEXN-AS1Q8NBZ9 246 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 CNFNQ9BYD5 112 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 V9GYV3 84 aa9.1□□□□□ -0.95
VPS28-202ENST00000377348 TRBV10-1A0A0K0K1A3 114 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 TRGC1P0CF51 173 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 RPL36AP83881 106 aaKnown RBP9.09□□□□□ -0.95
VPS28-202ENST00000377348 LELP1Q5T871 98 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 WDR73Q6P4I2 378 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 C15orf54Q8N8G6 183 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 RPL36ALQ969Q0 106 aaKnown RBP9.09□□□□□ -0.95
VPS28-202ENST00000377348 PKD1P98161 4303 aa9.09□□□□□ -0.95
VPS28-202ENST00000377348 DNAH11Q96DT5 4516 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 TRBV7-3A0A075B6L6 115 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 PRSS29PA6NIE9 313 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 HIGD1CA8MV81 97 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 DNAH10OSP0CZ25 163 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 FOXA3P55318 350 aaPredicted RBP9.08□□□□□ -0.96
VPS28-202ENST00000377348 UBE2D3P61077 147 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 UBE2D2P62837 147 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 SUMO4Q6EEV6 95 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 OR10G8Q8NGN5 311 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 TSKUQ8WUA8 353 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 DPH3P1Q9H4G8 78 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 TNFRSF18Q9Y5U5 241 aa9.08□□□□□ -0.96
VPS28-202ENST00000377348 TRAV8-6A0A0B4J262 113 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms