RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 H3BT86 120 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 WDR86Q86TI4 376 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 HIVEP2P31629 2446 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 RNF138Q8WVD3 245 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 OPRPNQ99935 248 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-208ENST00000367256 A0A0B4J2C4 111 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 LINC01620Q4KN68 170 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 C17orf58Q2M2W7 97 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 CAMK2N2Q96S95 79 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 PDE6GP18545 87 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 C16orf74Q96GX8 76 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 PTPRSQ13332 1948 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 NCR3O14931 201 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 GYPEP15421 78 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 NREPQ16612 68 aa5.76□□□□□ -1.49
SYNE1-208ENST00000367256 ATP5EP56381 51 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-208ENST00000367256 IGLV10-54A0A075B6I4 117 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 BUB3O43684 328 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 DUX4L9Q6RFH8 374 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-208ENST00000367256 TIMM17AQ99595 171 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 COX7A2LO14548 114 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 UNQ6494/PRO21346Q6UXR6 183 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 KAAG1Q9UBP8 84 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 UBE2AP49459 152 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 FOXE3Q13461 319 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 SND1-IT1Q9HBX3 110 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 GNRH2O43555 120 aa5.75□□□□□ -1.49
SYNE1-208ENST00000367256 PRR30Q53SZ7 412 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 TMEM61Q8N0U2 210 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 COL4A6Q14031 1691 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 CRYGBP07316 175 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 SH2D6Q7Z4S9 175 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 FAM120AOSQ5T036 256 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 BRK1Q8WUW1 75 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 RPL39LQ96EH5 51 aaKnown RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 U3KQE9 123 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 DAZ2Q13117 558 aaKnown RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 DAZ4Q86SG3 579 aaKnown RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 DAZ3Q9NR90 486 aaKnown RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 HIST2H2BCQ6DN03 193 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 TRBV6-1A0A0K0K1D8 114 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 G3V4G9 280 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 PIFOQ8TCI5 191 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 VPREB3Q9UKI3 123 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 MRPL23Q16540 153 aaKnown RBP5.74□□□□□ -1.49
SYNE1-208ENST00000367256 OXLD1Q5BKU9 147 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 DAND5Q8N907 189 aa5.74□□□□□ -1.49
SYNE1-208ENST00000367256 RAI1Q7Z5J4 1906 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-208ENST00000367256 LGALS9O00182 355 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 LOXP28300 417 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-208ENST00000367256 ABCA2Q9BZC7 2435 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 Q6ZS92 163 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 LYRM9A8MSI8 78 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 JMJD7-PLA2G4BH0Y9G9 81 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 DEFB136Q30KP8 78 aa5.73□□□□□ -1.49
SYNE1-208ENST00000367256 CTRLP40313 264 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 SPTSSBQ8NFR3 76 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 NDUFA1O15239 70 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 MED14OSP0DP75 135 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 FOXI1Q12951 378 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 SPATA12Q7Z6I5 190 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 TAX1BP3O14907 124 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGLV1-44P01699 117 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 ELANEP08246 267 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 ARTNQ5T4W7 220 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 SEM1Q6ZVN7 128 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 A4D1N5 150 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGKV4-1P06312 121 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 ATP5EP2Q5VTU8 51 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 H0Y9J4 135 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 TRBV12-3P01733 135 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGHV3-30P01768 117 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGHV3-33P01772 117 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGHV3-30-3P0DP02 117 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGHV3-30-5P0DP03 117 aa5.72□□□□□ -1.49
SYNE1-208ENST00000367256 IGLV3-9A0A075B6K5 115 aa5.71□□□□□ -1.49
SYNE1-208ENST00000367256 C4orf48Q5BLP8 95 aa5.71□□□□□ -1.49
SYNE1-208ENST00000367256 RNASE8Q8TDE3 154 aaKnown RBP5.71□□□□□ -1.49
SYNE1-208ENST00000367256 F8W735 103 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-208ENST00000367256 GP9P14770 177 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 C5orf38Q86SI9 138 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 CLEC2BQ92478 149 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 IGLV2-23P01705 113 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 SP5Q6BEB4 398 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-208ENST00000367256 RNF183Q96D59 192 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 C17orf77Q96MU5 243 aa5.71□□□□□ -1.5
SYNE1-208ENST00000367256 CCL24O00175 119 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 IGFL3Q6UXB1 125 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 UPK3BQ9BT76 320 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 TRBV10-2A0A0K0K1G8 114 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 ZNF491Q8N8L2 437 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 IGHV4OR15-8A0A075B7B6 117 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 A0A087WW49 117 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 ZFYVE26Q68DK2 2539 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 E9PLD3 99 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 Q6ZSR3 168 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 CXCL5P42830 114 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 HIGD2BQ4VC39 106 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 Q6ZR03 302 aa5.7□□□□□ -1.5
SYNE1-208ENST00000367256 LINC00643Q86TS7 51 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms