RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 A0A0U1RRA0 63 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 LGALS9BQ3B8N2 356 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 NPYP01303 97 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 C10orf126Q8N4M7 172 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 Q0VG73 95 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 Q8N2B8 174 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 COLCA2A8K830 154 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 COL5A1-AS1Q5SY13 56 aa7.62□□□□□ -1.19
USP54-201ENST00000339859 C9JQL5 133 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 ADCYAP1P18509 176 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 AMTNQ6UX39 209 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.61□□□□□ -1.19
USP54-201ENST00000339859 IGKV2-29A2NJV5 120 aaPredicted RBP7.61□□□□□ -1.19
USP54-201ENST00000339859 PRSS29PA6NIE9 313 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 C14orf177Q52M58 125 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 TTC32Q5I0X7 151 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 TRBV10-1A0A0K0K1A3 114 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 XCL1P47992 114 aa7.61□□□□□ -1.19
USP54-201ENST00000339859 IGHV4-28A0A0C4DH34 117 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 IGF2RP11717 2491 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 ACACBO00763 2458 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 IGHV4-30-4P0DP06 118 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 MDFICQ9P1T7 246 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 SNAI2O43623 268 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 TRAV26-1A0A087WT03 109 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 SFTA2Q6UW10 78 aa7.6□□□□□ -1.19
USP54-201ENST00000339859 C18orf32Q8TCD1 76 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 C14orf144Q96I85 54 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 SYS1-DBNDD2H3BUS1 97 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 IGLV1-51P01701 117 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 ZNF124Q15973 351 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 ZFP2Q6ZN57 461 aa7.59□□□□□ -1.19
USP54-201ENST00000339859 CTRLP40313 264 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 NUPR2A6NF83 97 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 F8WEM9 126 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 PROK1P58294 105 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 COX11Q9Y6N1 276 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 TRAV8-2A0A0B4J237 113 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 NPC2P61916 151 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 COX7A2LO14548 114 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 Q6ZTI0 123 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 VSIG2Q96IQ7 327 aa7.58□□□□□ -1.2
USP54-201ENST00000339859 C10orf91Q5T1B1 145 aa7.57□□□□□ -1.2
USP54-201ENST00000339859 PRB2P02812 416 aaPredicted RBP7.57□□□□□ -1.2
USP54-201ENST00000339859 RPL39LQ96EH5 51 aaKnown RBP7.57□□□□□ -1.2
USP54-201ENST00000339859 NHLRC4P0CG21 123 aaPredicted RBP7.57□□□□□ -1.2
USP54-201ENST00000339859 ORAOV1Q8WV07 137 aa7.57□□□□□ -1.2
USP54-201ENST00000339859 OVOL2Q9BRP0 275 aa7.57□□□□□ -1.2
USP54-201ENST00000339859 TP53TG3Q9ULZ0 132 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 SPTAN1Q13813 2472 aaKnown RBP7.56□□□□□ -1.2
USP54-201ENST00000339859 GAGE10A6NGK3 116 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 ESDP10768 282 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 CAMK2N2Q96S95 79 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 RPL18AQ02543 176 aaKnown RBP7.56□□□□□ -1.2
USP54-201ENST00000339859 HIST3H2BBQ8N257 126 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 PRRC2AP48634 2157 aaKnown RBP7.56□□□□□ -1.2
USP54-201ENST00000339859 CREBBPQ92793 2442 aa7.56□□□□□ -1.2
USP54-201ENST00000339859 GDF5OSQ5U4N7 250 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 GTSF1LQ9H1H1 148 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 PFN2P35080 140 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 UBE2BP63146 152 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
USP54-201ENST00000339859 DCANP1Q8TF63 244 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 PGPEP1Q9NXJ5 209 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 U3KQK5 164 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 RNF151Q2KHN1 245 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 ZC2HC1BQ5TFG8 222 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 HIST1H2BLQ99880 126 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 SPINK8P0C7L1 97 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 P0DMU3 169 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 FAM231AP0DMU4 169 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 FAM231CP0DMU5 169 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 SLC25A29Q8N8R3 303 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 WFDC10AQ9H1F0 79 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 A0A0J9YWU9 116 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 HSD52Q0P140 79 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 NFE4Q86UQ8 179 aa7.55□□□□□ -1.2
USP54-201ENST00000339859 CRYGDP07320 174 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 KRTAP24-1Q3LI83 254 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 FRMD6-AS1P0C7T7 363 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 C3orf79P0CE67 100 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.54□□□□□ -1.22e-6■■■■□ 24.7
USP54-201ENST00000339859 H7C423 109 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 RS1O15537 224 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 DDTP30046 118 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 ZNF664Q8N3J9 261 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 ERG28Q9UKR5 140 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 TSPAN13O95857 204 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 KLK12Q9UKR0 248 aa7.54□□□□□ -1.2
USP54-201ENST00000339859 DOCK11Q5JSL3 2073 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 GATD1Q8NB37 220 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 IGLV10-54A0A075B6I4 117 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 C19orf71A6NCJ1 209 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 FGF6P10767 208 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 ZFAND6Q6FIF0 208 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 TIRAPP58753 221 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 PLA2G2EQ9NZK7 142 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 MSRB1Q9NZV6 116 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 HERV-K104P63124 156 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 SHANK1Q9Y566 2161 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms