RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 A0A0J9YXV3 536 aa10.84□□□□□ -0.67
CSPG4-201ENST00000308508 DIRC1Q969H9 104 aa10.84□□□□□ -0.67
CSPG4-201ENST00000308508 GYPEP15421 78 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 WNK1Q9H4A3 2382 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 NUPR1O60356 82 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 DAND5Q8N907 189 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 NDUFC2-KCTD14E9PQ53 114 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 ARTNQ5T4W7 220 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 SLX1AQ9BQ83 275 aa10.83□□□□□ -0.68
CSPG4-201ENST00000308508 NDUFA1O15239 70 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 TRBV7-3A0A075B6L6 115 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 MPLKIPQ8TAP9 179 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 KAAG1Q9UBP8 84 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 SEM1Q6ZVN7 128 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 FAM236DA0A1B0GTK5 79 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 FAM236CP0DP71 79 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 GP9P14770 177 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 TRAV23DV6A0A075B6W5 121 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 NCR3O14931 201 aa10.82□□□□□ -0.68
CSPG4-201ENST00000308508 FGF23Q9GZV9 251 aaPredicted RBP10.82□□□□□ -0.68
CSPG4-201ENST00000308508 UBE2AP49459 152 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 RNF183Q96D59 192 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 IGLV10-54A0A075B6I4 117 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 K7ERS5 55 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 Q8N1Y9 231 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 NCOA6Q14686 2063 aaPredicted RBP10.81□□□□□ -0.68
CSPG4-201ENST00000308508 FAM110AQ9BQ89 295 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 WI2-2373I1.2A0A1W2PRP0 233 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 H0Y9J4 135 aa10.81□□□□□ -0.68
CSPG4-201ENST00000308508 MED13LQ71F56 2210 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 NDUFA11Q86Y39 141 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 RIF1Q5UIP0 2472 aaKnown RBP10.8□□□□□ -0.68
CSPG4-201ENST00000308508 C4orf48Q5BLP8 95 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 EML5Q05BV3 1969 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 PCDH15Q96QU1 1955 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 ODF1Q14990 250 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 HOXB4P17483 251 aaPredicted RBP10.8□□□□□ -0.68
CSPG4-201ENST00000308508 DIAPH2-AS1Q14236 149 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 DENND4CQ5VZ89 1909 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 IGLV1-44P01699 117 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 IGKV4-1P06312 121 aa10.8□□□□□ -0.68
CSPG4-201ENST00000308508 ATP5EP56381 51 aaPredicted RBP10.8□□□□□ -0.68
CSPG4-201ENST00000308508 RPL39P62891 51 aaKnown RBP10.79□□□□□ -0.68
CSPG4-201ENST00000308508 SPANXB1Q9NS25 103 aaPredicted RBP10.79□□□□□ -0.68
CSPG4-201ENST00000308508 IGHV1-58A0A0C4DH39 117 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 IGLV3-1P01715 115 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 ATP5EP2Q5VTU8 51 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 Q96MF0 132 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 GTSF1Q8WW33 167 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 C16orf54Q6UWD8 224 aa10.79□□□□□ -0.68
CSPG4-201ENST00000308508 WISP1O95388 367 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 TCL1BO95988 128 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 CTRLP40313 264 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 C3orf22Q8N5N4 141 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 CCL24O00175 119 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 MED14OSP0DP75 135 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 BPY2O14599 106 aa10.78□□□□□ -0.68
CSPG4-201ENST00000308508 VPREB3Q9UKI3 123 aa10.77□□□□□ -0.68
CSPG4-201ENST00000308508 PRR15LQ9BU68 103 aa10.77□□□□□ -0.69
CSPG4-201ENST00000308508 MIAQ16674 131 aa10.77□□□□□ -0.69
CSPG4-201ENST00000308508 IGKV2D-26A0A0A0MRZ7 120 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 A0A0U1RQV1 116 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 SPART-AS1P0CW21 52 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 TEX22C9J3V5 150 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 CCL18P55774 89 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 MIR7-3HGQ8N6C7 128 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 NPBQ8NG41 125 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 MAPK1IP1LQ8NDC0 245 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 MSRB1Q9NZV6 116 aa10.76□□□□□ -0.69
CSPG4-201ENST00000308508 Q8NFD4 153 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 CASC2Q6XLA1 102 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 USP17L23D6RBM5 183 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 C20orf197Q8N268 126 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 I3L2K1 104 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 NDUFC1O43677 76 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 COX7BP24311 80 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 PTH2Q96A98 100 aa10.75□□□□□ -0.69
CSPG4-201ENST00000308508 SPRY2O43597 315 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 HHLA3Q9XRX5 114 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 SP5Q6BEB4 398 aaPredicted RBP10.74□□□□□ -0.69
CSPG4-201ENST00000308508 MT-ATP8P03928 68 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 ZNF503-AS2A6NEH8 195 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 IGLC6P0CF74 106 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 APRG1Q8IVJ8 170 aa10.74□□□□□ -0.69
CSPG4-201ENST00000308508 KIF26AQ9ULI4 1882 aaPredicted RBP10.74□□□□□ -0.69
CSPG4-201ENST00000308508 RSPO1Q2MKA7 263 aaPredicted RBP10.73□□□□□ -0.69
CSPG4-201ENST00000308508 SDIM1Q6ZPB5 146 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 ARHGAP32A7KAX9 2087 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 NUP210Q8TEM1 1887 aaPredicted RBP10.73□□□□□ -0.69
CSPG4-201ENST00000308508 HIST2H2BDQ6DRA6 164 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 SPATA12Q7Z6I5 190 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGHV3-30P01768 117 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGHV3-33P01772 117 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGHV3-30-3P0DP02 117 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGHV3-30-5P0DP03 117 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 TTTY13Q9BZ97 58 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 TEX49A0A1B0GTD5 131 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 CRIPAKQ8N1N5 446 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 K7EIM0 57 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 SPAG11BQ08648 103 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms