RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 DYNLRB1Q9NP97 96 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 SMIM2Q9BVW6 85 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 DSCAMO60469 2012 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 J3QQQ9 107 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 TIMM8AO60220 97 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-213ENST00000636759 ELANEP08246 267 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 WT1P19544 449 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-213ENST00000636759 SYNJ2BPP57105 145 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 C1orf195Q5TG92 126 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 C2orf66Q6UXQ4 117 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 MBD3L2Q8NHZ7 208 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-213ENST00000636759 C17orf77Q96MU5 243 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 SHANK2-AS3Q9BTD1 123 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 AGPAT4-IT1Q9H0P7 198 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 CTSZQ9UBR2 303 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 C17orf100A8MU93 164 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 PRSS2P07478 247 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 NPC2P61916 151 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 LINC00336Q6ZUF6 198 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 CD177Q8N6Q3 437 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 SERP2Q8N6R1 65 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 DEFB124Q8NES8 71 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 C2orf48Q96LS8 159 aa5.25□□□□□ -1.57
SCN1A-213ENST00000636759 TRGV5A0A0B4J1U4 118 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 TRAV26-2A0A0B4J265 109 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 FAM236DA0A1B0GTK5 79 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 FAM236CP0DP71 79 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 CD40P25942 277 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 DEFB121Q5J5C9 76 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 MUSTN1Q8IVN3 82 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 ICOSQ9Y6W8 199 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 CACNA1GO43497 2377 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 ZZEF1O43149 2961 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 IGKV2-40A0A087WW87 121 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-213ENST00000636759 IQCF6A8MYZ5 107 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 IGKV2D-40P01614 121 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-213ENST00000636759 RPL18AQ02543 176 aaKnown RBP5.24□□□□□ -1.57
SCN1A-213ENST00000636759 SPANXN1Q5VSR9 72 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 TOMM6Q96B49 74 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 ZDBF2Q9HCK1 2354 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 C11orf86A6NJI1 115 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 OXTP01178 125 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 RHOHQ15669 191 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 NSUN5P1Q3KNT7 163 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 VMA21Q3ZAQ7 101 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 FDCSPQ8NFU4 85 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 DEFB127Q9H1M4 99 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 PRORYQ9H606 182 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 CSMD1Q96PZ7 3565 aa5.24□□□□□ -1.57
SCN1A-213ENST00000636759 E7EUB6 86 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 ZNRF1Q8ND25 227 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 Q8TAT8 98 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 TMEM167AQ8TBQ9 72 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 APELAP0DMC3 54 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 PRSS33Q8NF86 280 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 CLEC2BQ92478 149 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 CNFNQ9BYD5 112 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 DPH3P1Q9H4G8 78 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 DCHS2Q6V1P9 2916 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 PLXNB1O43157 2135 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 CGB3P0DN86 165 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 CGB7P0DN87 165 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 C5orf38Q86SI9 138 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 TMEM86BQ8N661 226 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 RNF125Q96EQ8 232 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 SVEP1Q4LDE5 3571 aa5.23□□□□□ -1.57
SCN1A-213ENST00000636759 DNAJC13O75165 2243 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 SPRY2O43597 315 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 SUMO2P61956 95 aaKnown RBP5.22□□□□□ -1.57
SCN1A-213ENST00000636759 ERCC8Q13216 396 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 NRACQ8N912 160 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 C9orf85Q96MD7 179 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 NAV3Q8IVL0 2385 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 IGHV1-2P23083 117 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 IGFL3Q6UXB1 125 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 C14orf178Q8N769 122 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-213ENST00000636759 KLF14Q8TD94 323 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-213ENST00000636759 PRRC2CQ9Y520 2896 aaKnown RBP5.22□□□□□ -1.57
SCN1A-213ENST00000636759 LST1O00453 97 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 TRGV3P03979 118 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 NBL1P41271 181 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 UBE2E1P51965 193 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 PDE6HQ13956 83 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 MSMPQ1L6U9 139 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 Q6ZT83 130 aa5.22□□□□□ -1.57
SCN1A-213ENST00000636759 TRAV12-3A0A0B4J271 114 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 A0A0U1RQV1 116 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 TMEM223A0PJW6 202 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 RPL27AP46776 148 aaKnown RBP5.21□□□□□ -1.57
SCN1A-213ENST00000636759 WFDC11Q8NEX6 87 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 SMCR5Q8TEV8 140 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 CYSTM1Q9H1C7 97 aa5.21□□□□□ -1.57
SCN1A-213ENST00000636759 ZNF80P51504 273 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-213ENST00000636759 FAM216BQ8N7L0 139 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 DKK4Q9UBT3 224 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 URB1O60287 2271 aaKnown RBP5.21□□□□□ -1.58
SCN1A-213ENST00000636759 IGKV1D-17A0A075B6S4 117 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 K7ENP7 123 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 IGKV3-15P01624 115 aa5.21□□□□□ -1.58
SCN1A-213ENST00000636759 TSPEAR-AS2P59090 65 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms