RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 MUC4Q99102 2169 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 IGHV4-28A0A0C4DH34 117 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 SNAI2O43623 268 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 OR5AL1P0C617 328 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 MIFP14174 115 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 FAM3BP58499 235 aaPredicted RBP14.79□□□□□ -0.04
CLN3-245ENST00000636172 LYZL1Q6UWQ5 148 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 NUP35Q8NFH5 326 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 PGLYRP4Q96LB8 373 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 IMMP2LQ96T52 175 aa14.79□□□□□ -0.04
CLN3-245ENST00000636172 HUWE1Q7Z6Z7 4374 aaKnown RBP14.78□□□□□ -0.04
CLN3-245ENST00000636172 MUC21A0A0G2JKD1 596 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 MUC21A0A140T8X8 626 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 SCO1O75880 301 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 CBLN2Q8IUK8 224 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 OR10AG1Q8NH19 301 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 URGCP-MRPS24S4R325 110 aa14.77□□□□□ -0.04
CLN3-245ENST00000636172 CXorf65A6NEN9 183 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 F2Z2F3 143 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 TMEM88Q6PEY1 159 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 SNURFLB1AK76 121 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 DEFB4AO15263 64 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 EMP1P54849 157 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 KCNIP4Q6PIL6 250 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 PHLDA3Q9Y5J5 127 aa14.76□□□□□ -0.05
CLN3-245ENST00000636172 DAZ2Q13117 558 aaKnown RBP14.75□□□□□ -0.05
CLN3-245ENST00000636172 SPXQ9BT56 116 aa14.75□□□□□ -0.05
CLN3-245ENST00000636172 CNFNQ9BYD5 112 aa14.75□□□□□ -0.05
CLN3-245ENST00000636172 NOP10Q9NPE3 64 aaKnown RBP14.75□□□□□ -0.05
CLN3-245ENST00000636172 SMCO4Q9NRQ5 59 aa14.75□□□□□ -0.05
CLN3-245ENST00000636172 COL7A1Q02388 2944 aa14.74□□□□□ -0.05
CLN3-245ENST00000636172 S100PP25815 95 aa14.74□□□□□ -0.05
CLN3-245ENST00000636172 SSTP61278 116 aa14.74□□□□□ -0.05
CLN3-245ENST00000636172 ZMAT4Q9H898 229 aa14.74□□□□□ -0.05
CLN3-245ENST00000636172 M0R2P5 195 aa14.73□□□□□ -0.05
CLN3-245ENST00000636172 M0R381 172 aa14.73□□□□□ -0.05
CLN3-245ENST00000636172 SPINK4O60575 86 aa14.73□□□□□ -0.05
CLN3-245ENST00000636172 NXPH4O95158 308 aa14.73□□□□□ -0.05
CLN3-245ENST00000636172 A0A1B0GUT8 65 aa14.72□□□□□ -0.05
CLN3-245ENST00000636172 DMRTA1Q5VZB9 504 aa14.72□□□□□ -0.05
CLN3-245ENST00000636172 YPEL4Q96NS1 127 aa14.72□□□□□ -0.05
CLN3-245ENST00000636172 IGHV4-4A0A075B6R2 117 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 CACNG7P62955 275 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 ZNF876PQ49A33 203 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 SPANXN1Q5VSR9 72 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 WDR73Q6P4I2 378 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 ZFP82Q8N141 532 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 BORCS7Q96B45 105 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 BTF3L4Q96K17 158 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 MRPL16Q9NX20 251 aaKnown RBP14.71□□□□□ -0.05
CLN3-245ENST00000636172 MSRB1Q9NZV6 116 aa14.71□□□□□ -0.05
CLN3-245ENST00000636172 TRAV9-1A0A075B6T8 112 aa14.71□□□□□ -0.06
CLN3-245ENST00000636172 NTF3P20783 257 aa14.71□□□□□ -0.06
CLN3-245ENST00000636172 ELOBQ15370 118 aa14.71□□□□□ -0.06
CLN3-245ENST00000636172 MRPL54Q6P161 138 aaKnown RBP14.71□□□□□ -0.06
CLN3-245ENST00000636172 Q6ZTI0 123 aa14.71□□□□□ -0.06
CLN3-245ENST00000636172 PTH2Q96A98 100 aa14.71□□□□□ -0.06
CLN3-245ENST00000636172 TRGV1A0A0A0MS02 117 aa14.7□□□□□ -0.06
CLN3-245ENST00000636172 LGALS9BQ3B8N2 356 aa14.7□□□□□ -0.06
CLN3-245ENST00000636172 SYT8Q8NBV8 401 aa14.7□□□□□ -0.06
CLN3-245ENST00000636172 C11orf68Q9H3H3 251 aaKnown RBP14.7□□□□□ -0.06
CLN3-245ENST00000636172 TWIST1Q15672 202 aa14.69□□□□□ -0.06
CLN3-245ENST00000636172 FAM222AQ5U5X8 452 aa14.69□□□□□ -0.06
CLN3-245ENST00000636172 RASL10AQ92737 203 aa14.69□□□□□ -0.06
CLN3-245ENST00000636172 DKK2Q9UBU2 259 aa14.69□□□□□ -0.06
CLN3-245ENST00000636172 TGIF2-C20orf24A0A0A6YYL0 155 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 A0A1B0GXF2 115 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 NHLRC4P0CG21 123 aaPredicted RBP14.68□□□□□ -0.06
CLN3-245ENST00000636172 RIGQ13278 110 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 PIK3CD-AS1Q5SR53 167 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 ATP5L2Q7Z4Y8 100 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 CELA1Q9UNI1 258 aa14.68□□□□□ -0.06
CLN3-245ENST00000636172 TGP01266 2768 aa14.67□□□□□ -0.06
CLN3-245ENST00000636172 A0A0J9YWU9 116 aa14.67□□□□□ -0.06
CLN3-245ENST00000636172 LYRM9A8MSI8 78 aa14.67□□□□□ -0.06
CLN3-245ENST00000636172 LINC00612Q8N6U2 182 aa14.67□□□□□ -0.06
CLN3-245ENST00000636172 TRBV24-1A0A075B6N3 115 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 JPT2Q9H910 190 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 GAGE12BA1L429 117 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 GAGE7O76087 117 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 GAGE12FP0CL80 117 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 GAGE12GP0CL81 117 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 GAGE12IP0CL82 117 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 HBBP68871 147 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 NDUFAF3Q9BU61 184 aa14.66□□□□□ -0.06
CLN3-245ENST00000636172 STAB2Q8WWQ8 2551 aa14.65□□□□□ -0.06
CLN3-245ENST00000636172 A0A1B0GW15 77 aa14.65□□□□□ -0.06
CLN3-245ENST00000636172 CAMPP49913 170 aa14.65□□□□□ -0.06
CLN3-245ENST00000636172 NACAE9PAV3 2078 aa14.64□□□□□ -0.07
CLN3-245ENST00000636172 SPART-AS1P0CW21 52 aa14.64□□□□□ -0.07
CLN3-245ENST00000636172 DEFB130BP0DP73 79 aa14.64□□□□□ -0.07
CLN3-245ENST00000636172 DEFB130AP0DP74 79 aa14.64□□□□□ -0.07
CLN3-245ENST00000636172 AP1S3Q96PC3 154 aa14.64□□□□□ -0.07
CLN3-245ENST00000636172 TRGC1P0CF51 173 aa14.63□□□□□ -0.07
CLN3-245ENST00000636172 EVI2AP22794 236 aa14.63□□□□□ -0.07
CLN3-245ENST00000636172 FAM210BQ96KR6 192 aa14.63□□□□□ -0.07
CLN3-245ENST00000636172 SAMD10Q9BYL1 202 aa14.63□□□□□ -0.07
CLN3-245ENST00000636172 A8MWV9 139 aa14.62□□□□□ -0.07
CLN3-245ENST00000636172 CFAP126Q5VTH2 177 aa14.62□□□□□ -0.07
CLN3-245ENST00000636172 RASL11AQ6T310 242 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms