RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CNFNQ9BYD5 112 aa11.08□□□□□ -0.64
TRIM28-209ENST00000597423 SCRT2Q9NQ03 307 aa11.08□□□□□ -0.64
TRIM28-209ENST00000597423 IGHV4-4A0A075B6R2 117 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 FRMD6-AS1P0C7T7 363 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 RNASE3P12724 160 aaKnown RBP11.07□□□□□ -0.64
TRIM28-209ENST00000597423 RAB4BP61018 213 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 ZFP82Q8N141 532 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 TMEM263Q8WUH6 116 aaKnown RBP11.07□□□□□ -0.64
TRIM28-209ENST00000597423 C16orf74Q96GX8 76 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 MDFICQ9P1T7 246 aa11.07□□□□□ -0.64
TRIM28-209ENST00000597423 SNURFLB1AK76 121 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 MT-ND6P03923 174 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 NTF3P20783 257 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 RPS10P46783 165 aaKnown RBP11.06□□□□□ -0.64
TRIM28-209ENST00000597423 CAMPP49913 170 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 DEFB121Q5J5C9 76 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 PTH2Q96A98 100 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 C9orf85Q96MD7 179 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 GNB1LQ9BYB4 327 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 TP53TG1Q9Y2A0 90 aa11.06□□□□□ -0.64
TRIM28-209ENST00000597423 SPRY2O43597 315 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 TRGC1P0CF51 173 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 SSTP61278 116 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 PIK3CD-AS1Q5SR53 167 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 RNF183Q96D59 192 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 GSN-AS1Q9NRJ2 163 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 PKD1L1Q8TDX9 2849 aa11.05□□□□□ -0.64
TRIM28-209ENST00000597423 A0A1B0GXF2 115 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 M0R2P5 195 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 M0R381 172 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 DEFB135Q30KP9 77 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 OR11H2Q8NH07 326 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 OR10AG1Q8NH19 301 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 NDUFAF3Q9BU61 184 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 TRAPPC1Q9Y5R8 145 aa11.04□□□□□ -0.64
TRIM28-209ENST00000597423 MUC21A0A0G2JKD1 596 aa11.03□□□□□ -0.64
TRIM28-209ENST00000597423 MUC21A0A140T8X8 626 aa11.03□□□□□ -0.64
TRIM28-209ENST00000597423 HLA-DQA1P01909 254 aa11.03□□□□□ -0.64
TRIM28-209ENST00000597423 SMIM17P0DL12 118 aa11.03□□□□□ -0.64
TRIM28-209ENST00000597423 AZU1P20160 251 aa11.03□□□□□ -0.64
TRIM28-209ENST00000597423 RNASE8Q8TDE3 154 aaKnown RBP11.03□□□□□ -0.64
TRIM28-209ENST00000597423 K7EIL1 84 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 MIFP14174 115 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 DAZ2Q13117 558 aaKnown RBP11.02□□□□□ -0.65
TRIM28-209ENST00000597423 LGALS9BQ3B8N2 356 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 ZNF876PQ49A33 203 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 C11orf72Q8NBR9 251 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 FRZBQ92765 325 aa11.02□□□□□ -0.65
TRIM28-209ENST00000597423 NXPH4O95158 308 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 APCSP02743 223 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 PRB2P02812 416 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-209ENST00000597423 PRM2P04554 102 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 DMRTA1Q5VZB9 504 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 TMEM136Q6ZRR5 245 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 GATD1Q8NB37 220 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 AP1S3Q96PC3 154 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 TMEM191AQ9H0A3 160 aa11.01□□□□□ -0.65
TRIM28-209ENST00000597423 CMYA5Q8N3K9 4069 aa11□□□□□ -0.65
TRIM28-209ENST00000597423 FABP9Q0Z7S8 132 aa11□□□□□ -0.65
TRIM28-209ENST00000597423 OVOL2Q9BRP0 275 aa11□□□□□ -0.65
TRIM28-209ENST00000597423 MRPL18Q9H0U6 180 aaKnown RBP11□□□□□ -0.65
TRIM28-209ENST00000597423 X6R8D5 127 aa11□□□□□ -0.65
TRIM28-209ENST00000597423 A8MWV9 139 aa10.99□□□□□ -0.65
TRIM28-209ENST00000597423 C1orf196B1AJZ1 125 aa10.99□□□□□ -0.65
TRIM28-209ENST00000597423 RASL10AQ92737 203 aa10.99□□□□□ -0.65
TRIM28-209ENST00000597423 MSRB1Q9NZV6 116 aa10.99□□□□□ -0.65
TRIM28-209ENST00000597423 TRGV1A0A0A0MS02 117 aa10.98□□□□□ -0.65
TRIM28-209ENST00000597423 SPATA25Q9BR10 227 aa10.98□□□□□ -0.65
TRIM28-209ENST00000597423 DPH3P1Q9H4G8 78 aa10.98□□□□□ -0.65
TRIM28-209ENST00000597423 NOP10Q9NPE3 64 aaKnown RBP10.98□□□□□ -0.65
TRIM28-209ENST00000597423 MGAM2Q2M2H8 2515 aa10.98□□□□□ -0.65
TRIM28-209ENST00000597423 CIDEAO60543 219 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 TRGC2P03986 189 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 EVI2AP22794 236 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 EMP1P54849 157 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 FAM104BQ5XKR9 115 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 C14orf178Q8N769 122 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-209ENST00000597423 IL17DQ8TAD2 202 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 MRAPQ8TCY5 172 aa10.97□□□□□ -0.65
TRIM28-209ENST00000597423 LYRM9A8MSI8 78 aa10.96□□□□□ -0.65
TRIM28-209ENST00000597423 PPBPP02775 128 aa10.96□□□□□ -0.65
TRIM28-209ENST00000597423 ZMAT4Q9H898 229 aa10.96□□□□□ -0.65
TRIM28-209ENST00000597423 IGHV4-28A0A0C4DH34 117 aa10.95□□□□□ -0.66
TRIM28-209ENST00000597423 TEX48A0A1B0GUV7 120 aa10.95□□□□□ -0.66
TRIM28-209ENST00000597423 RHODO00212 210 aa10.95□□□□□ -0.66
TRIM28-209ENST00000597423 RAB5BP61020 215 aa10.95□□□□□ -0.66
TRIM28-209ENST00000597423 SBSPONQ8IVN8 264 aa10.95□□□□□ -0.66
TRIM28-209ENST00000597423 MRPL16Q9NX20 251 aaKnown RBP10.95□□□□□ -0.66
TRIM28-209ENST00000597423 TRGV2A0A075B6R0 118 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 PLAC8L1A1L4L8 177 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 SPART-AS1P0CW21 52 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 RAB4AP20338 218 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 AMN1Q8IY45 258 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 OR4C5Q8NGB2 326 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 MRAP2Q96G30 205 aa10.94□□□□□ -0.66
TRIM28-209ENST00000597423 F5H697 171 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 RS1O15537 224 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 PPP1R17O96001 155 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 MGPP08493 103 aa10.93□□□□□ -0.66
TRIM28-209ENST00000597423 CKS2P33552 79 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms