RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 H3BVH4 76 aa17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 AKR1D1P51857 326 aa17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 FER1L6-AS1Q8NA97 138 aa17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 LINC00467Q9BRT7 94 aa17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 MRPL18Q9H0U6 180 aaKnown RBP17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 MDFICQ9P1T7 246 aa17.43■□□□□ 0.38
ATPAF1-213ENST00000574428 IGLC6P0CF74 106 aa17.42■□□□□ 0.38
ATPAF1-213ENST00000574428 S100A4P26447 101 aaKnown RBP17.42■□□□□ 0.38
ATPAF1-213ENST00000574428 TMEM136Q6ZRR5 245 aa17.42■□□□□ 0.38
ATPAF1-213ENST00000574428 IGHV3-16A0A0C4DH30 117 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 MUC21A0A0G2JKD1 596 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 MUC21A0A140T8X8 626 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 FAM231BA6NCW3 169 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 COX19Q49B96 90 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 WDR73Q6P4I2 378 aa17.41■□□□□ 0.38
ATPAF1-213ENST00000574428 TRGV11A0A075B6L2 103 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 SPRY2O43597 315 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 RNASE3P12724 160 aaKnown RBP17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 AZU1P20160 251 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 DEFB121Q5J5C9 76 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 LYZL1Q6UWQ5 148 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 ARMS2P0C7Q2 107 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 FOXA3P55318 350 aaPredicted RBP17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 SSTP61278 116 aa17.4■□□□□ 0.38
ATPAF1-213ENST00000574428 MT-ND6P03923 174 aa17.39■□□□□ 0.37
ATPAF1-213ENST00000574428 DNLZQ5SXM8 178 aa17.39■□□□□ 0.37
ATPAF1-213ENST00000574428 RCHY1Q96PM5 261 aa17.39■□□□□ 0.37
ATPAF1-213ENST00000574428 CTRLP40313 264 aa17.38■□□□□ 0.37
ATPAF1-213ENST00000574428 RASL11AQ6T310 242 aa17.38■□□□□ 0.37
ATPAF1-213ENST00000574428 NBEAL2Q6ZNJ1 2754 aa17.38■□□□□ 0.37
ATPAF1-213ENST00000574428 RAB4BP61018 213 aa17.38■□□□□ 0.37
ATPAF1-213ENST00000574428 Q6ZWC4 215 aa17.38■□□□□ 0.37
ATPAF1-213ENST00000574428 A0A1B0GXF2 115 aa17.37■□□□□ 0.37
ATPAF1-213ENST00000574428 IFITM10A6NMD0 228 aa17.37■□□□□ 0.37
ATPAF1-213ENST00000574428 ATP5L2Q7Z4Y8 100 aa17.37■□□□□ 0.37
ATPAF1-213ENST00000574428 SSBP4Q9BWG4 385 aaPredicted RBP17.37■□□□□ 0.37
ATPAF1-213ENST00000574428 HLA-DQA1P01909 254 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 OR5AL1P0C617 328 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 COA6Q5JTJ3 125 aaKnown RBP17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 HIST3H2BBQ8N257 126 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 C11orf72Q8NBR9 251 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 OR10AG1Q8NH19 301 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 GSN-AS1Q9NRJ2 163 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 X6R8D5 127 aa17.36■□□□□ 0.37
ATPAF1-213ENST00000574428 SNAI2O43623 268 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 RRN3P1Q2M238 152 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 RNASE8Q8TDE3 154 aaKnown RBP17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 RNF183Q96D59 192 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 C9orf85Q96MD7 179 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 SCRT2Q9NQ03 307 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 F2Z2F3 143 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 MED14OSP0DP75 135 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 ZNF415Q09FC8 603 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 PDZD11Q5EBL8 140 aa17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 TMEM263Q8WUH6 116 aaKnown RBP17.35■□□□□ 0.37
ATPAF1-213ENST00000574428 OR11H2Q8NH07 326 aa17.34■□□□□ 0.37
ATPAF1-213ENST00000574428 RETNQ9HD89 108 aa17.34■□□□□ 0.37
ATPAF1-213ENST00000574428 PHLDA3Q9Y5J5 127 aa17.34■□□□□ 0.37
ATPAF1-213ENST00000574428 A0A1B0GUT8 65 aa17.33■□□□□ 0.37
ATPAF1-213ENST00000574428 BORCS7Q96B45 105 aa17.33■□□□□ 0.37
ATPAF1-213ENST00000574428 HBBP68871 147 aa17.33■□□□□ 0.36
ATPAF1-213ENST00000574428 SBSPONQ8IVN8 264 aa17.33■□□□□ 0.36
ATPAF1-213ENST00000574428 MRAPQ8TCY5 172 aa17.33■□□□□ 0.36
ATPAF1-213ENST00000574428 M0R381 172 aa17.32■□□□□ 0.36
ATPAF1-213ENST00000574428 CAMPP49913 170 aa17.32■□□□□ 0.36
ATPAF1-213ENST00000574428 C16orf74Q96GX8 76 aa17.32■□□□□ 0.36
ATPAF1-213ENST00000574428 CNFNQ9BYD5 112 aa17.32■□□□□ 0.36
ATPAF1-213ENST00000574428 SLAQ13239 276 aa17.31■□□□□ 0.36
ATPAF1-213ENST00000574428 KIAA1644Q3SXP7 199 aa17.31■□□□□ 0.36
ATPAF1-213ENST00000574428 SPANXN1Q5VSR9 72 aa17.31■□□□□ 0.36
ATPAF1-213ENST00000574428 MSRB1Q9NZV6 116 aa17.31■□□□□ 0.36
ATPAF1-213ENST00000574428 PLAC8L1A1L4L8 177 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 APCSP02743 223 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 S100A8P05109 93 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 NTF3P20783 257 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 TWIST1Q15672 202 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 OVOL2Q9BRP0 275 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 RIGQ13278 110 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 ZNF493Q6ZR52 646 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 LINC00518Q8N0U6 118 aa17.3■□□□□ 0.36
ATPAF1-213ENST00000574428 SMIM9A6NGZ8 99 aa17.29■□□□□ 0.36
ATPAF1-213ENST00000574428 DMRTA1Q5VZB9 504 aa17.29■□□□□ 0.36
ATPAF1-213ENST00000574428 IL17DQ8TAD2 202 aa17.29■□□□□ 0.36
ATPAF1-213ENST00000574428 MUC4Q99102 2169 aa17.29■□□□□ 0.36
ATPAF1-213ENST00000574428 EMP1P54849 157 aa17.28■□□□□ 0.36
ATPAF1-213ENST00000574428 CACNG7P62955 275 aa17.28■□□□□ 0.36
ATPAF1-213ENST00000574428 TP53TG1Q9Y2A0 90 aa17.28■□□□□ 0.36
ATPAF1-213ENST00000574428 S100A2P29034 98 aa17.28■□□□□ 0.36
ATPAF1-213ENST00000574428 NXPH4O95158 308 aa17.27■□□□□ 0.35
ATPAF1-213ENST00000574428 IGHV4-4A0A075B6R2 117 aa17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 IGHV4-28A0A0C4DH34 117 aa17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 HIST1H2BLQ99880 126 aa17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 SPXQ9BT56 116 aa17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 NOP10Q9NPE3 64 aaKnown RBP17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 MRPL16Q9NX20 251 aaKnown RBP17.26■□□□□ 0.35
ATPAF1-213ENST00000574428 M0R2P5 195 aa17.25■□□□□ 0.35
ATPAF1-213ENST00000574428 DEFB4AO15263 64 aa17.25■□□□□ 0.35
ATPAF1-213ENST00000574428 FABP4P15090 132 aa17.25■□□□□ 0.35
ATPAF1-213ENST00000574428 SRIP30626 198 aa17.25■□□□□ 0.35
ATPAF1-213ENST00000574428 ZNF876PQ49A33 203 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms