RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MORN3Q6PF18 240 aaPredicted RBP5.92□□□□□ -1.46
VPS39-213ENST00000570062 SYT8Q8NBV8 401 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 TMEM158Q8WZ71 300 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 KRTAP4-5Q9BYR2 181 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 C19orf73Q9NVV2 129 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 TP53TG3Q9ULZ0 132 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 PHLDA3Q9Y5J5 127 aa5.92□□□□□ -1.46
VPS39-213ENST00000570062 IGHV1OR15-1A0A075B7D0 117 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 LOC102724200A0A096LPH7 203 aaPredicted RBP5.91□□□□□ -1.46
VPS39-213ENST00000570062 ARMS2P0C7Q2 107 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 GZMBP10144 247 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 BEAN1Q3B7T3 259 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 LCE5AQ5TCM9 118 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 FAM104BQ5XKR9 115 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 ORMDL3Q8N138 153 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.91□□□□□ -1.46
VPS39-213ENST00000570062 PTH2Q96A98 100 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 CHCHD1Q96BP2 118 aaKnown RBP5.91□□□□□ -1.46
VPS39-213ENST00000570062 ALKBH7Q9BT30 221 aaPredicted RBP5.91□□□□□ -1.46
VPS39-213ENST00000570062 ZNF747Q9BV97 191 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 SCRT2Q9NQ03 307 aa5.91□□□□□ -1.46
VPS39-213ENST00000570062 NSD1Q96L73 2696 aaPredicted RBP5.91□□□□□ -1.46
VPS39-213ENST00000570062 CUBNO60494 3623 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 TRAV12-3A0A0B4J271 114 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 GRIFINA4D1Z8 144 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 INSP01308 110 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 SRIP30626 198 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 SLAQ13239 276 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 ANXA2RQ3ZCQ2 193 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 GFI1BQ5VTD9 330 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 AMTNQ6UX39 209 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 GTSCR1Q86UQ5 136 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 WFDC9Q8NEX5 89 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 NAGKQ9UJ70 344 aa5.9□□□□□ -1.46
VPS39-213ENST00000570062 H3BS24 57 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 CD7P09564 240 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 SMIM17P0DL12 118 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 CKS2P33552 79 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 AKR1D1P51857 326 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 GDF5OSQ5U4N7 250 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 PRIMA1Q86XR5 153 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 HIST3H2BBQ8N257 126 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 MRAP2Q96G30 205 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 AP1S3Q96PC3 154 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 SPXQ9BT56 116 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 U3KQK5 164 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 TLN2Q9Y4G6 2542 aa5.89□□□□□ -1.47
VPS39-213ENST00000570062 CBY3A6NI87 242 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 KNCNA6PVL3 124 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 J3KRW8 73 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 K7EMI3 77 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 HSBP1O75506 76 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 NXPH4O95158 308 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 IGKV3-20P01619 116 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 SMIM6P0DI80 62 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 G0S2P27469 103 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 KRTAP10-3P60369 221 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 SPINK13Q1W4C9 94 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 ODF3L2Q3SX64 289 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 PRR9Q5T870 116 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 TRPT1Q86TN4 253 aaKnown RBP5.88□□□□□ -1.47
VPS39-213ENST00000570062 C3orf56Q8N813 242 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 SAMD10Q9BYL1 202 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 DPH3P1Q9H4G8 78 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 C11orf21Q9P2W6 132 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 GOLT1BQ9Y3E0 138 aa5.88□□□□□ -1.47
VPS39-213ENST00000570062 SONP18583 2426 aaKnown RBP5.88□□□□□ -1.47
VPS39-213ENST00000570062 IGHV3-16A0A0C4DH30 117 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 LINC01549A6NIU2 74 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 H3BVH4 76 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 M0R2Z0 102 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 M0R381 172 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 CIDEAO60543 219 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 LINC00614P0C842 121 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 ZNF415Q09FC8 603 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 KIAA1644Q3SXP7 199 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 MUC21Q5SSG8 566 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 C12orf54Q6X4T0 127 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 ZNF575Q86XF7 245 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 DEFB125Q8N687 156 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 PRSS3P2Q8NHM4 247 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 C18orf32Q8TCD1 76 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 PRELID3AQ96N28 172 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 LINC01587Q99440 93 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 TMEM208Q9BTX3 173 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 NXT2Q9NPJ8 142 aaKnown RBP5.87□□□□□ -1.47
VPS39-213ENST00000570062 GSN-AS1Q9NRJ2 163 aa5.87□□□□□ -1.47
VPS39-213ENST00000570062 PRSS47A8MTI9 375 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 TCAPO15273 167 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 CRXO43186 299 aaPredicted RBP5.86□□□□□ -1.47
VPS39-213ENST00000570062 GNRH2O43555 120 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 FRMD6-AS1P0C7T7 363 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 RNASE3P12724 160 aaKnown RBP5.86□□□□□ -1.47
VPS39-213ENST00000570062 DEFB1P60022 68 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 FA2HQ7L5A8 372 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 Q8N1Y9 231 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 OR10AG1Q8NH19 301 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 C9orf85Q96MD7 179 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 HIST1H2BLQ99880 126 aa5.86□□□□□ -1.47
VPS39-213ENST00000570062 C20orf78Q9BR46 151 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms