RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CACNG7P62955 275 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 CBLN2Q8IUK8 224 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 SYT8Q8NBV8 401 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 PGLYRP4Q96LB8 373 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 LINC00467Q9BRT7 94 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 PHLDA3Q9Y5J5 127 aa8.55□□□□□ -1.04
LDLR-212ENST00000560467 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
LDLR-212ENST00000560467 IGKV3D-20A0A0C4DH25 116 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 A0A0J9YWU9 116 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 A0A1B0GUT8 65 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 CRXO43186 299 aaPredicted RBP8.54□□□□□ -1.04
LDLR-212ENST00000560467 SCO1O75880 301 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 FOXA3P55318 350 aaPredicted RBP8.54□□□□□ -1.04
LDLR-212ENST00000560467 KIR3DS1Q14943 382 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 SPANXN1Q5VSR9 72 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 WDR73Q6P4I2 378 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 ZNF493Q6ZR52 646 aa8.54□□□□□ -1.04
LDLR-212ENST00000560467 NUPR2A6NF83 97 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 SMIM9A6NGZ8 99 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 MED14OSP0DP75 135 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 GZMBP10144 247 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 RAB4BP61018 213 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 ZNF415Q09FC8 603 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 RRN3P1Q2M238 152 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 Q6ZWC4 215 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 ATP5L2Q7Z4Y8 100 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.53□□□□□ -1.04
LDLR-212ENST00000560467 NUP35Q8NFH5 326 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 FAM210BQ96KR6 192 aa8.53□□□□□ -1.04
LDLR-212ENST00000560467 TRBV24-1A0A075B6N3 115 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 SNURFLB1AK76 121 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 GNRH2O43555 120 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 SPINK4O60575 86 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 OR5AL1P0C617 328 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 ARMS2P0C7Q2 107 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 ELOBQ15370 118 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 TWIST1Q15672 202 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 DNLZQ5SXM8 178 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 CEMP1Q6PRD7 247 aaPredicted RBP8.52□□□□□ -1.05
LDLR-212ENST00000560467 RASL11AQ6T310 242 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 LYZL1Q6UWQ5 148 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 ZFP82Q8N141 532 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 C16orf74Q96GX8 76 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 SPXQ9BT56 116 aa8.52□□□□□ -1.05
LDLR-212ENST00000560467 HECTD4Q9Y4D8 3996 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 H3BVH4 76 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 TYMSP04818 313 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 SMIM17P0DL12 118 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 SSTP61278 116 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 HBBP68871 147 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 MRPL54Q6P161 138 aaKnown RBP8.51□□□□□ -1.05
LDLR-212ENST00000560467 GTSF1Q8WW33 167 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 C11orf21Q9P2W6 132 aa8.51□□□□□ -1.05
LDLR-212ENST00000560467 IGHV3-16A0A0C4DH30 117 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 MT-ND6P03923 174 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 TRGC1P0CF51 173 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 IGLC6P0CF74 106 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 CTRLP40313 264 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 CAMPP49913 170 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 DEFB135Q30KP9 77 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 C1orf158Q8N1D5 194 aa8.5□□□□□ -1.05
LDLR-212ENST00000560467 TMEM263Q8WUH6 116 aaKnown RBP8.5□□□□□ -1.05
LDLR-212ENST00000560467 TGIF2-C20orf24A0A0A6YYL0 155 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 M0R381 172 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 SPRY2O43597 315 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 RAB5AP20339 215 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 RPS10P46783 165 aaKnown RBP8.49□□□□□ -1.05
LDLR-212ENST00000560467 ZNF705AQ6ZN79 300 aaPredicted RBP8.49□□□□□ -1.05
LDLR-212ENST00000560467 Q6ZQT7 251 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 OR11H2Q8NH07 326 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 SSBP4Q9BWG4 385 aaPredicted RBP8.49□□□□□ -1.05
LDLR-212ENST00000560467 TP53TG1Q9Y2A0 90 aa8.49□□□□□ -1.05
LDLR-212ENST00000560467 M0R2P5 195 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 SNAI2O43623 268 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 GIG44P09565 113 aaPredicted RBP8.48□□□□□ -1.05
LDLR-212ENST00000560467 MIFP14174 115 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 NTF3P20783 257 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 ZNF876PQ49A33 203 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 CSNK1G2-AS1Q8NCQ2 148 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 FRZBQ92765 325 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 NDUFAF3Q9BU61 184 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 GNB1LQ9BYB4 327 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 GSN-AS1Q9NRJ2 163 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 MDFICQ9P1T7 246 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 TP53TG3Q9ULZ0 132 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 TMA7Q9Y2S6 64 aaKnown RBP8.48□□□□□ -1.05
LDLR-212ENST00000560467 KLK5Q9Y337 293 aaPredicted RBP8.48□□□□□ -1.05
LDLR-212ENST00000560467 TRAPPC1Q9Y5R8 145 aa8.48□□□□□ -1.05
LDLR-212ENST00000560467 KIAA1109Q2LD37 5005 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 COLCA2A8K830 154 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 HLA-DQA1P01909 254 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 RBMY1A1P0DJD3 496 aaKnown RBP8.47□□□□□ -1.05
LDLR-212ENST00000560467 RBMY1CP0DJD4 496 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 RBMY1FQ15415 496 aaKnown RBP8.47□□□□□ -1.05
LDLR-212ENST00000560467 PIK3CD-AS1Q5SR53 167 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 RNF183Q96D59 192 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 AP1S3Q96PC3 154 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 PCLOQ9Y6V0 5065 aa8.47□□□□□ -1.05
LDLR-212ENST00000560467 IGHV4-4A0A075B6R2 117 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 MUC21A0A0G2JKD1 596 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms