RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 NAT8BQ9UHF3 227 aa3.69□□□□□ -1.82
VTI1B-202ENST00000553619 AGRNO00468 2067 aa3.69□□□□□ -1.82
VTI1B-202ENST00000553619 LOC102724200A0A096LPH7 203 aaPredicted RBP3.68□□□□□ -1.82
VTI1B-202ENST00000553619 KIR2DL5BA0A0G2JN68 375 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 KIR2DL5BA0A0G2JPC4 375 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 A0A1B0GW15 77 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 KLLNB2CW77 178 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 F2Z2F3 143 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 SH2D1AO60880 128 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 INSP01308 110 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 IGKV3-20P01619 116 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 IGKV2-30P06310 120 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 CXCL1P09341 107 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 S100A4P26447 101 aaKnown RBP3.68□□□□□ -1.82
VTI1B-202ENST00000553619 APOC4P55056 127 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 FOXA3P55318 350 aaPredicted RBP3.68□□□□□ -1.82
VTI1B-202ENST00000553619 EGFEM1PQ0D2K5 195 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 GDF5OSQ5U4N7 250 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 TRPT1Q86TN4 253 aaKnown RBP3.68□□□□□ -1.82
VTI1B-202ENST00000553619 KIR2DL5AQ8N109 375 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 ZFAND2AQ8N6M9 145 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 KIR2DL5BQ8NHK3 375 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 Q8TAT8 98 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 LINC01587Q99440 93 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 PYGO2Q9BRQ0 406 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 CSTL1Q9H114 145 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 SRD5A3Q9H8P0 318 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 GOLT1BQ9Y3E0 138 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 V9GYV3 84 aa3.68□□□□□ -1.82
VTI1B-202ENST00000553619 ANK3Q12955 4377 aaKnown RBP3.68□□□□□ -1.82
VTI1B-202ENST00000553619 IGHV1OR15-1A0A075B7D0 117 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 TRAV12-3A0A0B4J271 114 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 A0A1B0GV90 55 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 SMIM27A0A1W2PRY6 76 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 A8MZ25 164 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 C1orf196B1AJZ1 125 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 ZNF324O75467 553 aaPredicted RBP3.67□□□□□ -1.82
VTI1B-202ENST00000553619 PRB4P10163 310 aaPredicted RBP3.67□□□□□ -1.82
VTI1B-202ENST00000553619 G0S2P27469 103 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 ASIPP42127 132 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 CRIP1P50238 77 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 FAM3BP58499 235 aaPredicted RBP3.67□□□□□ -1.82
VTI1B-202ENST00000553619 DEFB1P60022 68 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 CACNG7P62955 275 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 RIGQ13278 110 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 SPINK13Q1W4C9 94 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 RASL11AQ6T310 242 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 ATRAIDQ6UW56 229 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 AMTNQ6UX39 209 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 DEFB125Q8N687 156 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 PRSS3P2Q8NHM4 247 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 LINC00467Q9BRT7 94 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 SPXQ9BT56 116 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 TMEM208Q9BTX3 173 aa3.67□□□□□ -1.82
VTI1B-202ENST00000553619 SETD2Q9BYW2 2564 aaPredicted RBP3.66□□□□□ -1.82
VTI1B-202ENST00000553619 TRBV24-1A0A075B6N3 115 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 TRAV12-2A0A075B6T6 113 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 A0A1B0GUT8 65 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 SMIM9A6NGZ8 99 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 HIGD1CA8MV81 97 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 M0R2Z0 102 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 RPL35AP18077 110 aaKnown RBP3.66□□□□□ -1.82
VTI1B-202ENST00000553619 S100A2P29034 98 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 ZNF80P51504 273 aaPredicted RBP3.66□□□□□ -1.82
VTI1B-202ENST00000553619 FXYD7P58549 80 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 ELOBQ15370 118 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 TDRG1Q3Y452 100 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 ANXA2RQ3ZCQ2 193 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 GFI1BQ5VTD9 330 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 LINC00322Q6ZN03 302 aaPredicted RBP3.66□□□□□ -1.82
VTI1B-202ENST00000553619 ATP5L2Q7Z4Y8 100 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 Q8N9P0 234 aaPredicted RBP3.66□□□□□ -1.82
VTI1B-202ENST00000553619 FER1L6-AS1Q8NA97 138 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 C14orf144Q96I85 54 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 XCL2Q9UBD3 114 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 URGCP-MRPS24S4R325 110 aa3.66□□□□□ -1.82
VTI1B-202ENST00000553619 CELSR1Q9NYQ6 3014 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 TMSB15BA0A087X1C1 80 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 IGKV3D-20A0A0C4DH25 116 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 C5orf52A6NGY3 159 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 PRSS29PA6NIE9 313 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 CRXO43186 299 aaPredicted RBP3.65□□□□□ -1.83
VTI1B-202ENST00000553619 DLEU1O43261 78 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 GNRH2O43555 120 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 CA1P00915 261 aaPredicted RBP3.65□□□□□ -1.83
VTI1B-202ENST00000553619 MT-ND6P03923 174 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 OR5AL1P0C617 328 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 TRGC1P0CF51 173 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 HTN1P15515 57 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 DDTP30046 118 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 SUMO2P61956 95 aaKnown RBP3.65□□□□□ -1.83
VTI1B-202ENST00000553619 ZNF415Q09FC8 603 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 RRN3P1Q2M238 152 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 MUC21Q5SSG8 566 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 SPANXN1Q5VSR9 72 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 TMEM88Q6PEY1 159 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 LYZL1Q6UWQ5 148 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 ZNF493Q6ZR52 646 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 Q6ZWC4 215 aa3.65□□□□□ -1.83
VTI1B-202ENST00000553619 CBLN2Q8IUK8 224 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms