RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RREB1Q92766 1687 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 J3QLW9 94 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 YPEL1O60688 119 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 IGLC6P0CF74 106 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 ATP11AUNQ6ZP68 121 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 MMGT1Q8N4V1 131 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 ANP32BQ92688 251 aaKnown RBP0.57□□□□□ -2.32
VPS29-205ENST00000548539 VPS25Q9BRG1 176 aa0.57□□□□□ -2.32
VPS29-205ENST00000548539 FAM236AA0A1B0GUQ0 79 aa0.56□□□□□ -2.32
VPS29-205ENST00000548539 FAM236BA0A1B0GV22 79 aa0.56□□□□□ -2.32
VPS29-205ENST00000548539 SARNPP82979 210 aaKnown RBP0.56□□□□□ -2.32
VPS29-205ENST00000548539 MAFIPQ8WZ33 124 aa0.56□□□□□ -2.32
VPS29-205ENST00000548539 BLMP54132 1417 aaPredicted RBP0.55□□□□□ -2.32
VPS29-205ENST00000548539 ERCC6Q03468 1493 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 TRAV2A0A0B4J234 112 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 TEX49A0A1B0GTD5 131 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 M0R2P5 195 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 MPC1LP0DKB6 136 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 ALX1Q15699 326 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 SMR3AQ99954 134 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 ATG2AQ2TAZ0 1938 aa0.55□□□□□ -2.32
VPS29-205ENST00000548539 TRBV20-1A0A075B6N2 111 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 TCRBV3S1A0A5B6 114 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 ZNF670-ZNF695F2Z2N8 137 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 M0R2Z0 102 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 LINC00694P0DN24 101 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 PYYP10082 97 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 KRTAP21-1Q3LI58 79 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 IFI27L1Q96BM0 104 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 DSCR8Q96T75 97 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 COA4Q9NYJ1 87 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 AFDNP55196 1824 aaKnown RBP0.54□□□□□ -2.32
VPS29-205ENST00000548539 UHRF1BP1LA0JNW5 1464 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 ASH1LQ9NR48 2969 aaKnown RBP0.54□□□□□ -2.32
VPS29-205ENST00000548539 FRAS1Q86XX4 4008 aa0.54□□□□□ -2.32
VPS29-205ENST00000548539 DLEC1Q9Y238 1755 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 ZNF462Q96JM2 2506 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 J3QR89 54 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 KRTAP2-3P0C7H8 128 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 ARPC4P59998 168 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 ELOF1P60002 83 aaKnown RBP0.53□□□□□ -2.32
VPS29-205ENST00000548539 MIC13Q5XKP0 118 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 OR2T2Q6IF00 324 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 TSKUQ8WUA8 353 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 KRTAP2-4Q9BYR9 128 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 KRTAP2-1Q9BYU5 128 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 BET1LQ9NYM9 111 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 OVOS2A0A0J9YW53 1432 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 OVOS2Q6IE36 1432 aa0.53□□□□□ -2.32
VPS29-205ENST00000548539 CASZ1Q86V15 1759 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 A0A096LNT2 108 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 LINC00587B1AMM8 73 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 CYP2G1PQ6ZSU1 146 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 CTAGE3PQ8IX95 158 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 TSTD1Q8NFU3 115 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 NINQ8N4C6 2090 aa0.52□□□□□ -2.33
VPS29-205ENST00000548539 A0A1B0GV90 55 aa0.51□□□□□ -2.33
VPS29-205ENST00000548539 DISP2A7MBM2 1401 aa0.51□□□□□ -2.33
VPS29-205ENST00000548539 K7ERU9 68 aa0.51□□□□□ -2.33
VPS29-205ENST00000548539 NDUFA2O43678 99 aa0.51□□□□□ -2.33
VPS29-205ENST00000548539 MUC5ACP98088 5654 aa0.51□□□□□ -2.33
VPS29-205ENST00000548539 ZDBF2Q9HCK1 2354 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 PTPRMP28827 1452 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 NCOA3Q9Y6Q9 1424 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 TRAV12-2A0A075B6T6 113 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 NPC2P61916 151 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 SMIM21Q3B7S5 101 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 LINC01545Q5VT33 79 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 PPP1R1CQ8WVI7 109 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 FAM107BQ9H098 131 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 SAR1AQ9NR31 198 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 COPZ2Q9P299 210 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 NDUFA12Q9UI09 145 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 ERG28Q9UKR5 140 aa0.5□□□□□ -2.33
VPS29-205ENST00000548539 SMARCA2P51531 1590 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 PEG3Q9GZU2 1588 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 FHAD1B1AJZ9 1412 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 MYH9P35579 1960 aaKnown RBP0.49□□□□□ -2.33
VPS29-205ENST00000548539 ATP6V1G2-DDX39BF2Z307 99 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 CCDC179H3BU77 68 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 HMGN1P05114 100 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 TSPAN19P0C672 248 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 EMX2Q04743 252 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 SPCS2Q15005 226 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 CGREF1Q99674 301 aa0.49□□□□□ -2.33
VPS29-205ENST00000548539 KCPQ6ZWJ8 1503 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 MYH6P13533 1939 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 CDK5RAP2Q96SN8 1893 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 FOCADQ5VW36 1801 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 RBBP6Q7Z6E9 1792 aaKnown RBP0.48□□□□□ -2.33
VPS29-205ENST00000548539 TRAV12-3A0A0B4J271 114 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 LOC100130705A0A1B0GUX0 176 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 S100A12P80511 92 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 SCIMPQ6UWF3 145 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 NDUFA11Q86Y39 141 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 VSTM2AQ8TAG5 236 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 MYH7P12883 1935 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 WNK3Q9BYP7 1800 aa0.48□□□□□ -2.33
VPS29-205ENST00000548539 PRDM2Q13029 1718 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 AKAP11Q9UKA4 1901 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms