RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 MRPL32Q9BYC8 188 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 TMEM14AQ9Y6G1 99 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 SPTAN1Q13813 2472 aaKnown RBP3.48□□□□□ -1.85
PCF11-202ENST00000528336 MED12Q93074 2177 aa3.48□□□□□ -1.85
PCF11-202ENST00000528336 TENM4Q6N022 2769 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 NOTCH2Q04721 2471 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 COL12A1Q99715 3063 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 TRAV13-1A0A0B4J241 112 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 TCRBV3S1A0A5B6 114 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 C1orf196B1AJZ1 125 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 H3BMG7 143 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 LEPROTO15243 131 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 NAPSAO96009 420 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 FABP2P12104 132 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 KRTAP5-9P26371 169 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 SRP14P37108 136 aaKnown RBP3.47□□□□□ -1.85
PCF11-202ENST00000528336 RPL27AP46776 148 aaKnown RBP3.47□□□□□ -1.85
PCF11-202ENST00000528336 DYNLT3P51808 116 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 SMIM11AP58511 58 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 EIF5AP63241 154 aaKnown RBP3.47□□□□□ -1.85
PCF11-202ENST00000528336 HBBP68871 147 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 LDLRAD2Q5SZI1 272 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 C10orf91Q5T1B1 145 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 RPRMLQ8N4K4 120 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 OR8D4Q8NGM9 314 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 LINC01560Q8TB33 94 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 YPEL2Q96QA6 119 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 SLC39A9Q9NUM3 307 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 HEATR5AQ86XA9 2040 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 ZGRF1Q86YA3 2104 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
PCF11-202ENST00000528336 USP9YO00507 2555 aaPredicted RBP3.47□□□□□ -1.85
PCF11-202ENST00000528336 SPTBN1Q01082 2364 aaKnown RBP3.46□□□□□ -1.86
PCF11-202ENST00000528336 TRBV27A0A0K0K1C4 114 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 LECT2O14960 151 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 KRASP01116 189 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 CXCL1P09341 107 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 DIAPH2-AS1Q14236 149 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 TRAPPC6BQ86SZ2 158 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 BRK1Q8WUW1 75 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 SFT2D1Q8WV19 159 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 ADAT1Q9BUB4 502 aaKnown RBP3.46□□□□□ -1.86
PCF11-202ENST00000528336 GABARAPL1Q9H0R8 117 aa3.46□□□□□ -1.86
PCF11-202ENST00000528336 SOX21Q9Y651 276 aaPredicted RBP3.46□□□□□ -1.86
PCF11-202ENST00000528336 DIDO1Q9BTC0 2240 aaKnown RBP3.46□□□□□ -1.86
PCF11-202ENST00000528336 PTPN13Q12923 2485 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGKV2-28A0A075B6P5 120 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGHV3-15A0A0B4J1V0 119 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 TMEM218A2RU14 115 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 PLXNB1O43157 2135 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGKV1D-33P01593 117 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGKV1-33P01594 117 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGKV2D-28P01615 120 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 IGKV1-16P04430 117 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 FREM3P0C091 2139 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 ASAH2BP0C7U1 165 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 AKAIN1P0CW23 69 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 MEF2BQ02080 365 aaPredicted RBP3.45□□□□□ -1.86
PCF11-202ENST00000528336 SNX29P2Q8IUI4 249 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 LINC00471Q8N535 108 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 MIR7-3HGQ8N6C7 128 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 CNEP1R1Q8N9A8 125 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 SPANXA2-OT1Q8N9U9 137 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 PFN4Q8NHR9 129 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 LCE3DQ9BYE3 92 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 MPC1Q9Y5U8 109 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 PCNX1Q96RV3 2341 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 ADGRG4Q8IZF6 3080 aa3.45□□□□□ -1.86
PCF11-202ENST00000528336 MYO7BQ6PIF6 2116 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 ANKHD1Q8IWZ3 2542 aaKnown RBP3.44□□□□□ -1.86
PCF11-202ENST00000528336 TRBV24-1A0A075B6N3 115 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 TRAV27A0A087WT01 109 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 FAM236AA0A1B0GUQ0 79 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 FAM236BA0A1B0GV22 79 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 GNGT2O14610 69 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 NDUFB3O43676 98 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 SH2D1AO60880 128 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 MRPL33O75394 65 aaKnown RBP3.44□□□□□ -1.86
PCF11-202ENST00000528336 LHBP01229 141 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 TRGV3P03979 118 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 GUCA1AP43080 201 aaPredicted RBP3.44□□□□□ -1.86
PCF11-202ENST00000528336 FXYD7P58549 80 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 RHOGP84095 191 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 TFF3Q07654 80 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 AAED1Q7RTV5 226 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 SAXO1Q8IYX7 474 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 TEX29Q8N6K0 151 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 CLDND2Q8NHS1 167 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 NAA38Q9BRA0 125 aaKnown RBP3.44□□□□□ -1.86
PCF11-202ENST00000528336 BANF2Q9H503 90 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 C16orf95Q9H693 158 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 LINC00574Q9H8X3 128 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 ZNF355PQ9NSJ1 428 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 ZNF222Q9UK12 451 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 AP4S1Q9Y587 144 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 HECTD1Q9ULT8 2610 aa3.44□□□□□ -1.86
PCF11-202ENST00000528336 NCOA6Q14686 2063 aaPredicted RBP3.43□□□□□ -1.86
PCF11-202ENST00000528336 FLNBO75369 2602 aaKnown RBP3.43□□□□□ -1.86
PCF11-202ENST00000528336 OR2T8A6NH00 312 aa3.43□□□□□ -1.86
PCF11-202ENST00000528336 A8MWV9 139 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms